Melospiza georgiana isolate bMelGeo1 chromosome 30, bMelGeo1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051592.1.\nAssembly name: bMelGeo1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/31. The original whole-genome shotgun project has the\naccession JAQMCQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy0; purge_dups\n v. 1.2.5 + galaxy3; Bionano Solve v.\n 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2\nAssembly Name :: bMelGeo1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 31.58x\nSequencing Technology :: PacBio Sequel II HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028018845.1-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/03/2023\n##Genome-Annotation-Data-END##
basic salivary proline-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
leucine rich repeat containing 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
leucine-rich repeat-containing protein 4B
uncharacterized LOC131094625; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094625, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
uncharacterized LOC131094625, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC131094625, transcript variant X4
uncharacterized LOC131094625, transcript variant X1
aspartate dehydrogenase domain containing; Derived by automated computational analysis using gene prediction method: Gnomon.
aspartate dehydrogenase domain containing
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
aspartate dehydrogenase domain-containing protein
Josephin domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Josephin domain containing 2, transcript variant X9
Josephin domain containing 2, transcript variant X7
Josephin domain containing 2, transcript variant X2
Josephin domain containing 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Josephin domain containing 2, transcript variant X8
Josephin domain containing 2, transcript variant X3
Josephin domain containing 2, transcript variant X4
Josephin domain containing 2, transcript variant X5
Josephin domain containing 2, transcript variant X6
uncharacterized LOC131094623; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon AGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon GCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
zinc finger protein 497-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094620; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094620, transcript variant X3
uncharacterized LOC131094620, transcript variant X2
uncharacterized LOC131094620, transcript variant X5
uncharacterized LOC131094620, transcript variant X1
uncharacterized LOC131094620, transcript variant X4
ubiquitin conjugating enzyme E2 M; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin conjugating enzyme E2 M, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 11 Proteins
natterin-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
charged multivesicular body protein 2A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
ubiquitin conjugating enzyme E2 M, transcript variant X1
tripartite motif containing 28; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription intermediary factor 1-beta
zinc finger protein 628-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
uncharacterized LOC131094584; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
butyrophilin subfamily 2 member A2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA lysine (anticodon UUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamine (anticodon CUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
solute carrier family 27 member 5; Derived by automated computational analysis using gene prediction method: Gnomon.
long-chain fatty acid transport protein 5
THAP domain containing 7; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
uncharacterized LOC131094624; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094622; Derived by automated computational analysis using gene prediction method: Gnomon.
28S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF02543
Derived by automated computational analysis using gene prediction method: cmsearch.
5.8S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00002
TOG array regulator of axonemal microtubules protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
TOG array regulator of axonemal microtubules protein 2-like
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-3-like
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
PHD finger protein 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle protein 20 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 23 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
thrombopoietin receptor-like; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA SNORA74; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00090
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: PHD finger protein 7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
hydrocephalus-inducing protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
hydrocephalus-inducing protein-like, transcript variant X1
hydrocephalus-inducing protein-like isoform X1
hydrocephalus-inducing protein-like, transcript variant X2
hydrocephalus-inducing protein-like isoform X2
collagen alpha-1(I) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
18S ribosomal RNA; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01960
uncharacterized LOC131094601; Derived by automated computational analysis using gene prediction method: Gnomon.
mucin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
atherin-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094605; Derived by automated computational analysis using gene prediction method: Gnomon.
basic proline-rich protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 1-like
serine/threonine-protein kinase PAK 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC131094635; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131094634; Derived by automated computational analysis using gene prediction method: Gnomon.
small nucleolar RNA SNORD45; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF00279
antigen peptide transporter 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 4 bases in 3 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: antigen peptide transporter 2-like
uncharacterized LOC131094637; Derived by automated computational analysis using gene prediction method: Gnomon.