Melospiza georgiana isolate bMelGeo1 chromosome 25, bMelGeo1.pri, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Passerellidae; Melospiza.
REFSEQ INFORMATION: The reference sequence is identical to\nCM051587.1.\nAssembly name: bMelGeo1.pri\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2023/01/31. The original whole-genome shotgun project has the\naccession JAQMCQ000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-MAY-2022\nAssembly Method :: HiFiasm v. 0.15.4 + galaxy0; purge_dups\n v. 1.2.5 + galaxy3; Bionano Solve v.\n 3.6.1 + galaxy2; salsa v. 2.3 + galaxy2\nAssembly Name :: bMelGeo1.pri\nDiploid :: Principal Haplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 31.58x\nSequencing Technology :: PacBio Sequel II HiFi\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_028018845.1-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/03/2023\n##Genome-Annotation-Data-END##
olfactory receptor 14C36-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
olfactory receptor 14I1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
serine/threonine-protein kinase pim-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase pim-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 42 Proteins
zinc finger protein 774-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
TOG array regulator of axonemal microtubules protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
TOG array regulator of axonemal microtubules protein 2-like, transcript variant X1
TOG array regulator of axonemal microtubules protein 2-like
uncharacterized LOC131093461; Derived by automated computational analysis using gene prediction method: Gnomon.
TOG array regulator of axonemal microtubules protein 2-like, transcript variant X2
olfactory receptor 14J1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 30 Proteins
synaptonemal complex protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
nicotinate-nucleotide pyrophosphorylase [carboxylating]-like; Derived by automated computational analysis using gene prediction method: Gnomon.
nicotinate-nucleotide pyrophosphorylase [carboxylating]-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64 Proteins
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
zinc finger protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93 Proteins
gastrula zinc finger protein XlCGF49.1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
gastrula zinc finger protein XlCGF49.1-like
Fc receptor-like protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: Fc receptor-like protein 4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
zinc finger protein OZF-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads
zinc finger protein 436-like; Derived by automated computational analysis using gene prediction method: Gnomon.
atypical kinase COQ8B, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
atypical kinase COQ8B, mitochondrial-like
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 41 Proteins
polyunsaturated fatty acid lipoxygenase ALOX15B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
polyunsaturated fatty acid lipoxygenase ALOX15B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 37 Proteins
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 225 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 138 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 3-like
class I histocompatibility antigen, F10 alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like
COORDINATES: polyA evidence [ECO:0006239]
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 850-like
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X3
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X5
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X6
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X4
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X2
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X7
class I histocompatibility antigen, F10 alpha chain-like isoform X5
class I histocompatibility antigen, F10 alpha chain-like isoform X2
class I histocompatibility antigen, F10 alpha chain-like isoform X4
class I histocompatibility antigen, F10 alpha chain-like isoform X6
class I histocompatibility antigen, F10 alpha chain-like isoform X7
class I histocompatibility antigen, F10 alpha chain-like isoform X3
class I histocompatibility antigen, F10 alpha chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 124 Proteins
class I histocompatibility antigen, F10 alpha chain-like isoform X1
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 41 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 3 Proteins
flotillin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 19 Proteins
tubulin beta class I; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of DNA damage checkpoint protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mediator of DNA damage checkpoint protein 1-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1-like
coiled-coil alpha-helical rod protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil alpha-helical rod protein 1-like, transcript variant X1
coiled-coil alpha-helical rod protein 1-like, transcript variant X3
coiled-coil alpha-helical rod protein 1-like, transcript variant X2
coiled-coil alpha-helical rod protein 1-like isoform X1
coiled-coil alpha-helical rod protein 1-like isoform X3
uncharacterized protein LOC131093406 isoform X2
uncharacterized LOC131093419; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093358; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97 Proteins
uncharacterized LOC131093361; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC131093361
zona pellucida sperm-binding protein 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome P450 2C19-like; Derived by automated computational analysis using gene prediction method: Gnomon.
cytochrome P450 2C19-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 58 Proteins
cytochrome P450 2C19-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 long SRA reads, 80 Proteins
cytochrome P450 2C19-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 long SRA reads, 32 Proteins
uncharacterized LOC131093408; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093377; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 850 Proteins
zinc finger protein 239-like, transcript variant X2
zinc finger protein 239-like, transcript variant X1
zinc finger protein 586-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 129 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 120 Proteins
zinc finger protein 572-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 208-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 407 Proteins
SLA class II histocompatibility antigen, DQ haplotype C beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
H-2 class II histocompatibility antigen, E-D beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
H-2 class II histocompatibility antigen, E-D beta chain-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 77 Proteins
LOW QUALITY PROTEIN: H-2 class II histocompatibility antigen, E-D beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 142 Proteins
uncharacterized LOC131093431; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093431, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
uncharacterized LOC131093431, transcript variant X1
zinc finger protein 883-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 119 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 883-like
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 151 Proteins
uncharacterized LOC131093401; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093429; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093429, transcript variant X1
uncharacterized protein LOC131093429 isoform X1
uncharacterized LOC131093429, transcript variant X2
uncharacterized protein LOC131093429 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 160 Proteins
uncharacterized LOC131093462; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 150 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 125 Proteins
zinc finger protein 180-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 418-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
class II histocompatibility antigen, B-L beta chain-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 115 Proteins
class II histocompatibility antigen, B-L beta chain-like isoform X1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
class II histocompatibility antigen, B-L beta chain-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 165 Proteins
class II histocompatibility antigen, B-L beta chain-like isoform X2
zinc finger protein OZF-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94 Proteins
zinc finger protein OZF-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98 Proteins
zinc finger protein OZF-like, transcript variant X3
uncharacterized LOC131093388; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093387; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093463; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 148 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 156 Proteins
uncharacterized LOC131093367; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093380; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093380, transcript variant X1
uncharacterized LOC131093380, transcript variant X2
uncharacterized protein LOC131093380 isoform X1
uncharacterized protein LOC131093380 isoform X2
uncharacterized LOC131093379; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093379, transcript variant X2
uncharacterized LOC131093379, transcript variant X1
uncharacterized protein LOC131093379 isoform X2
uncharacterized protein LOC131093379 isoform X1
uncharacterized LOC131093368; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093369; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093370; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093441; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093392; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093427; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093460; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093460, transcript variant X1
uncharacterized LOC131093460, transcript variant X2
uncharacterized LOC131093460, transcript variant X3
uncharacterized LOC131093460, transcript variant X4
uncharacterized LOC131093371; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093403; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093372; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093382; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093382, transcript variant X3
uncharacterized LOC131093382, transcript variant X2
uncharacterized LOC131093382, transcript variant X1
uncharacterized protein LOC131093382 isoform X3
uncharacterized protein LOC131093382 isoform X2
uncharacterized protein LOC131093382 isoform X1
uncharacterized LOC131093373; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093391; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131093321; Derived by automated computational analysis using gene prediction method: Gnomon.
ras/Rap GTPase-activating protein SynGAP-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ras/Rap GTPase-activating protein SynGAP-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
collagen alpha-3(IV) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: ras/Rap GTPase-activating protein SynGAP-like
uncharacterized LOC131093465; Derived by automated computational analysis using gene prediction method: Gnomon.
protein CutA homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
PHD finger protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIFC1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 6 Proteins