Hoyosella subflava DQS3-9A1 plasmid pAS9A-1, complete sequence.
type: Entry
definition: Hoyosella subflava DQS3-9A1 plasmid pAS9A-1, complete sequence.
sequence version: NC_015560.1
sequence date: 2023-04-17
sequence: sequence
division: CON
label: NC_015560.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02603151
keyword: RefSeq
source: Hoyosella subflava DQS3-9A1
organism: Hoyosella subflava DQS3-9A1
taxonomy: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Hoyosellaceae; Hoyosella.
reference: 1
references: 21725023
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002787.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 14:44:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,577\nCDSs (total) :: 4,520\nGenes (coding) :: 4,460\nCDSs (with protein) :: 4,460\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 23 of 60\nPseudo Genes (incomplete) :: 51 of 60\nPseudo Genes (internal stop) :: 2 of 60\nPseudo Genes (multiple problems) :: 15 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17897
topology: circular
so has quality: SO_0000988
location: 1..17897
location: region:1-17897:1
RO_0002162: 443218

NC_015560
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02603151
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Amycolicicoccus subflavus DQS3-9A1T, an actinomycete isolated from crude oil-polluted soil
author: Cai, M.
author: Chen, W.M.
author: Nie, Y.
author: Chi, C.Q.
author: Wang, Y.N.
author: Tang, Y.Q.
author: Li, G.Y.
author: Wu, X.L.
journal: J Bacteriol
volume: 193
issue: 17
pages: 4538-4539
year: 2011
pubmed: 21725023

21725023
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Cai, M.
author: Chen, W.-M.
author: Nie, Y.
author: Chi, C.-Q.
author: Wang, Y.-N.
author: Tang, Y.-Q.
author: Wu, X.-L.
journal: Submitted (11-MAY-2011) Department of Energy and Resources Engineering, College of Engineering, Peking University, No.5 Yiheyuan Road, Haidian District, Beijing 100871, P. R. China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17897:1
position: 17897
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17897:1:source
so part of: sequence
organism: Hoyosella subflava DQS3-9A1
mol type: genomic DNA
strain: DQS3-9A1
isolation source: crude oil-polluted soil
type material: type strain of Hoyosella subflava
plasmid: pAS9A-1
country: China
note: type strain of Amycolicicoccus subflavus

443218
type: Taxonomy
SIO_000068: taxonomy

AS9A_RS24240
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS24240
old locus tag: AS9A_P10001
so part of: sequence
location: 15..155
location: region:15-155:1
so has part: feature:15-155:1:exon
subclass of: SO_0000010

position:15:1
position: 15
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:155:1
position: 155
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15-155:1:exon

AS9A_RS24240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS24240
old locus tag: AS9A_P10001
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLVLKRAQFLERPPLRCALLVPEPEHIPAPQPGVTAHPMRGKLTAF
SIO_010081: AS9A_RS24240
subclass of: SO_0000673
so part of: AS9A_RS24240
location: 15..155
location: region:15-155:1
so has part: feature:15-155:1:exon

WP_013798025.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15-155:1:exon

AS9A_RS21925
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21925
old locus tag: AS9A_P10002
so part of: sequence
location: complement(201..881)
location: region:201-881:-1
so has part: feature:201-881:-1:exon
subclass of: SO_0000010

position:201:-1
position: 201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:881:-1
position: 881
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:201-881:-1:exon

AS9A_RS21925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21925
old locus tag: AS9A_P10002
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDVVRDLRVKRYFVYRFTADLHGTPERFGCTVSSEGRADIQARNLTAASSMTFSGEDAPAEPMQVSVILRDGKLFQRFDQDGSGDWIELADTGSGWLNELLPLRLLEFADSEKPLTGDGVTIVGVPVARIPGETFTAMQGETNSATASLLDPSGTVRISVTCADGSLTVCDVSIPCTDGNEDRMRIELAPARKFEVMPPAGACQQFSNIEDFTQTASQEMGTEEQ
SIO_010081: AS9A_RS21925
subclass of: SO_0000673
so part of: AS9A_RS21925
location: complement(201..881)
location: region:201-881:-1
so has part: feature:201-881:-1:exon

WP_013798026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:201-881:-1:exon

AS9A_RS21930
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21930
old locus tag: AS9A_P10003
so part of: sequence
location: complement(918..1226)
location: region:918-1226:-1
so has part: feature:918-1226:-1:exon
subclass of: SO_0000010

position:918:-1
position: 918
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1226:-1
position: 1226
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:918-1226:-1:exon

AS9A_RS21930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21930
old locus tag: AS9A_P10003
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGTSTAGEAGLGQFGGLRPRQSNDGGCVSCAAAAKDAEMQANGWLTIRNLNEAESQAYLDAHVPGWKFEPMLVIDEGDGRITARRLRAGPHLCNPKVALNL
SIO_010081: AS9A_RS21930
subclass of: SO_0000673
so part of: AS9A_RS21930
location: complement(918..1226)
location: region:918-1226:-1
so has part: feature:918-1226:-1:exon

WP_013798027.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:918-1226:-1:exon

AS9A_RS22985
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22985
old locus tag: AS9A_P10004
so part of: sequence
location: complement(1236..1511)
location: region:1236-1511:-1
so has part: feature:1236-1511:-1:exon
subclass of: SO_0000010

position:1236:-1
position: 1236
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1511:-1
position: 1511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1236-1511:-1:exon

AS9A_RS22985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22985
old locus tag: AS9A_P10004
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAARFGLTTGHHSGADGYVLNAHVDALVDAYGLVPDFAGEVVLRVVSGPFPPLDRGVAPIAVVATDLMDSLTTRERRAGTRVLQKLLDALS
SIO_010081: AS9A_RS22985
subclass of: SO_0000673
so part of: AS9A_RS22985
location: complement(1236..1511)
location: region:1236-1511:-1
so has part: feature:1236-1511:-1:exon

WP_013798028.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1236-1511:-1:exon

AS9A_RS21940
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21940
so part of: sequence
location: complement(1779..2057)
location: region:1779-2057:-1
so has part: feature:1779-2057:-1:exon
subclass of: SO_0000010

position:1779:-1
position: 1779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2057:-1
position: 2057
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1779-2057:-1:exon

AS9A_RS21940
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21940
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPARKEPVRAFGGLQKAPRKAHPLAPEPAPSEPETSKPAATTASARTTLVPFSTRITPELLKEVRRAAVEKDMKIHDITIEALTAWLGGKNR
SIO_010081: AS9A_RS21940
subclass of: SO_0000673
so part of: AS9A_RS21940
location: complement(1779..2057)
location: region:1779-2057:-1
so has part: feature:1779-2057:-1:exon

WP_041452386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1779-2057:-1:exon

AS9A_RS21945
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21945
old locus tag: AS9A_P10007
so part of: sequence
location: complement(2057..2827)
location: region:2057-2827:-1
so has part: feature:2057-2827:-1:exon
subclass of: SO_0000010

position:2827:-1
position: 2827
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2057-2827:-1:exon

AS9A_RS21945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21945
old locus tag: AS9A_P10007
inference: COORDINATES: protein motif:HMM:NF013793.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MTRRVAIANQKGGVGKTTVALGLASAASAAGISTLLIDLDPQGNATSCLGVDPADLEFTANDVLHADAKGVAADAIAPSKWDHISLIGSDLSLAERDGDQALGSEHRLRKALDTDVLGSFELVLIDCQPSVGKLVSNALIASDSVLIVTEPSVSASQGVANVMHTVDTVKELFNPALELLGVILNRVPPRSREAEFRTEELSSALGERLWSPHIPLRTVIAEAQGAREPIHAYGNRAADLISIFDVHLARIMNGGK
SIO_010081: AS9A_RS21945
subclass of: SO_0000673
so part of: AS9A_RS21945
location: complement(2057..2827)
location: region:2057-2827:-1
so has part: feature:2057-2827:-1:exon

WP_049793971.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2057-2827:-1:exon

AS9A_RS21955
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21955
old locus tag: AS9A_P10009
so part of: sequence
location: 3326..3703
location: region:3326-3703:1
so has part: feature:3326-3703:1:exon
subclass of: SO_0000010

position:3326:1
position: 3326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3703:1
position: 3703
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3326-3703:1:exon

AS9A_RS21955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21955
old locus tag: AS9A_P10009
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEQVAPKAGEPGGGADVPLEQVRQITYNTIYANNVAVGSPNSALTTNHGVQPGDLPALIDALRGEGLPESDVEMIREEIEASGGEAPATRLQRVRDNLLSKGGEVIGGVSVSVLTALMKGYFGIE
SIO_010081: AS9A_RS21955
subclass of: SO_0000673
so part of: AS9A_RS21955
location: 3326..3703
location: region:3326-3703:1
so has part: feature:3326-3703:1:exon

WP_013798033.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3326-3703:1:exon

AS9A_RS21960
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21960
old locus tag: AS9A_P10012
so part of: sequence
location: 4188..4403
location: region:4188-4403:1
so has part: feature:4188-4403:1:exon
subclass of: SO_0000010

position:4188:1
position: 4188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4403:1
position: 4403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4188-4403:1:exon

AS9A_RS21960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21960
old locus tag: AS9A_P10012
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAGPGKRGPRSKGPREVVFVKMHPELKAALYEAAAERGMTATDYVAQLVARDTGLVRFLKQQEVLPLQKSA
SIO_010081: AS9A_RS21960
subclass of: SO_0000673
so part of: AS9A_RS21960
location: 4188..4403
location: region:4188-4403:1
so has part: feature:4188-4403:1:exon

WP_013798036.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4188-4403:1:exon

AS9A_RS23945
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS23945
so part of: sequence
location: complement(4884..5165)
location: region:4884-5165:-1
so has part: feature:4884-5165:-1:exon
subclass of: SO_0000010

position:4884:-1
position: 4884
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5165:-1
position: 5165
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4884-5165:-1:exon

AS9A_RS23945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS23945
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPAESAGFVQHGYGAPAAGSIAAFPRLESLSEGAQAAWLYVGDHAEFPGEVSGPLDLSPAYLGMTDQAGTGPVTVQFADRHPAVTAGLVVCAM
SIO_010081: AS9A_RS23945
subclass of: SO_0000673
so part of: AS9A_RS23945
location: complement(4884..5165)
location: region:4884-5165:-1
so has part: feature:4884-5165:-1:exon

WP_041452388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4884-5165:-1:exon

AS9A_RS23525
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS23525
pseudo: true
so part of: sequence
location: complement(<5898..6125)
location: region:5898-6125:-1
so has part: feature:5898-6125:-1:exon
subclass of: SO_0000010

position:5898:-1
position: 5898
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6125:-1
position: 6125
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5898-6125:-1:exon

AS9A_RS23525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS23525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016463548.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS21 family transposase
SIO_010081: AS9A_RS23525
subclass of: SO_0000673
so part of: AS9A_RS23525
location: complement(<5898..6125)
location: region:5898-6125:-1
so has part: feature:5898-6125:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5898-6125:-1:exon

AS9A_RS24250
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS24250
so part of: sequence
location: complement(6584..6925)
location: region:6584-6925:-1
so has part: feature:6584-6925:-1:exon
subclass of: SO_0000010

position:6584:-1
position: 6584
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6925:-1
position: 6925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6584-6925:-1:exon

AS9A_RS24250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS24250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVVGWAFATPTLGTVNAHTTKVAASLLIRSLVRCRLAVPTDTMVHTFPASPDFCRTGIRVTQDQYLEKVIYAEGAARCCVIVIVLNRAFPLRGYRFGYFCPSEQLRVLFPQL
SIO_010081: AS9A_RS24250
subclass of: SO_0000673
so part of: AS9A_RS24250
location: complement(6584..6925)
location: region:6584-6925:-1
so has part: feature:6584-6925:-1:exon

WP_158307399.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6584-6925:-1:exon

AS9A_RS22990
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22990
old locus tag: AS9A_P10016
so part of: sequence
location: 7179..8423
location: region:7179-8423:1
so has part: feature:7179-8423:1:exon
subclass of: SO_0000010

position:7179:1
position: 7179
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8423:1
position: 8423
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7179-8423:1:exon

AS9A_RS22990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22990
old locus tag: AS9A_P10016
inference: COORDINATES: protein motif:HMM:NF019913.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSRDEGPLRGRPSHSYNNLPKPPPGHTFRSETEPVPDGFTKEEADTAELMAMTATAGCEWFWPSPHAVCGAILQRYKAMGGRDSWLGLPNSPEYTNPDGIGKRSQFLNGSIYWHPSTGAHPVTILYMTKWNQLGWETGWLGYPTAGEVGHGPFGSQQEFQGAGLFWSQPTGVYAVGGAIRAKYDTVGGATGFLGYPTSDELTPPDGVGRFNTFQRGSIYWHPIFGAHPVHGVILAVWGNAGFEAGQYGYPIADETSTSTETNQQFQHGHIAFSLQNPVAQDFHDCKLNTEWPHVSSHVDNTVNVVTTGTCTHPKRKVSHTTQLVHTPECGFGTCVLRTRTSGDSKGDGVNAVIQEDNWSSTNMECQPGKYRAETKWTIVNADGGVLETVARTPQVQLGTGTGGLDKNCDRSYN
SIO_010081: AS9A_RS22990
subclass of: SO_0000673
so part of: AS9A_RS22990
location: 7179..8423
location: region:7179-8423:1
so has part: feature:7179-8423:1:exon

WP_158307400.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7179-8423:1:exon

AS9A_RS23535
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS23535
old locus tag: AS9A_P10017
so part of: sequence
location: 8645..9361
location: region:8645-9361:1
so has part: feature:8645-9361:1:exon
subclass of: SO_0000010

position:8645:1
position: 8645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9361:1
position: 9361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9361:1:exon

AS9A_RS23535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS23535
old locus tag: AS9A_P10017
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRTTWAMSDICSAHYLFEDGGTNASGNVAGLVSAAFPAYARILHPAYRRVSEATSAAPASFASVRWTTVAKHSGAIAHPAMEWEAISAGHRDPETLVWDVPPSTGRLPSPEQMVLAGVLEDHTSTPERCWFAFAEARGLTVPPDYPRIITAMGPMIVFCGAVLDAGRTFQYESPNLWWPEDRRWCVASDIDLMATYVGGSLACIEDLLASPSLEAMPAKPDQKITIDADTVNPPPPQP
SIO_010081: AS9A_RS23535
subclass of: SO_0000673
so part of: AS9A_RS23535
location: 8645..9361
location: region:8645-9361:1
so has part: feature:8645-9361:1:exon

WP_148262657.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8645-9361:1:exon

AS9A_RS24730
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS24730
old locus tag: AS9A_P10018
so part of: sequence
location: complement(9408..9557)
location: region:9408-9557:-1
so has part: feature:9408-9557:-1:exon
subclass of: SO_0000010

position:9408:-1
position: 9408
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9557:-1
position: 9557
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9408-9557:-1:exon

AS9A_RS24730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS24730
old locus tag: AS9A_P10018
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017567381.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MVDEDKRRAILARRAEGQSLREIARGVGVSLAVVHGEVKAAEQTMTELP
SIO_010081: AS9A_RS24730
subclass of: SO_0000673
so part of: AS9A_RS24730
location: complement(9408..9557)
location: region:9408-9557:-1
so has part: feature:9408-9557:-1:exon

WP_013798042.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9408-9557:-1:exon

AS9A_RS23540
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS23540
pseudo: true
so part of: sequence
location: <9592..10174
location: region:9592-10174:1
so has part: feature:9592-10174:1:exon
subclass of: SO_0000010

position:9592:1
position: 9592
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:10174:1
position: 10174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9592-10174:1:exon

AS9A_RS23540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS23540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015103105.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: AS9A_RS23540
subclass of: SO_0000673
so part of: AS9A_RS23540
location: <9592..10174
location: region:9592-10174:1
so has part: feature:9592-10174:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9592-10174:1:exon

AS9A_RS21995
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS21995
old locus tag: AS9A_P10019
so part of: sequence
location: 10569..11159
location: region:10569-11159:1
so has part: feature:10569-11159:1:exon
subclass of: SO_0000010

position:10569:1
position: 10569
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11159:1
position: 11159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10569-11159:1:exon

AS9A_RS21995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS21995
old locus tag: AS9A_P10019
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013573044.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MATTGTLVGYARCSTDEQDLTAQRQQLRDLGVSADRIYLDHGLTGTNRARPGLDQALAAVRAGDTLVVPKLDRLARSVPDARAIGDDLATRGIKLSLGGQIYDPTDPMGKMFFNILATFAEFEVDLLRMRTREGMVIARAKGRLKGRQPKLTTKQQTELRRMHASGNYTITDLAELFNISRPTVYRTLRPAESGPA
SIO_010081: AS9A_RS21995
subclass of: SO_0000673
so part of: AS9A_RS21995
location: 10569..11159
location: region:10569-11159:1
so has part: feature:10569-11159:1:exon

WP_041452392.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10569-11159:1:exon

AS9A_RS22000
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22000
old locus tag: AS9A_P10020
so part of: sequence
location: complement(11586..11915)
location: region:11586-11915:-1
so has part: feature:11586-11915:-1:exon
subclass of: SO_0000010

position:11586:-1
position: 11586
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11915:-1
position: 11915
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11586-11915:-1:exon

AS9A_RS22000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22000
old locus tag: AS9A_P10020
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRLRFAAWAEMLDMMLPTALSTRLPRFVQRLLRIGPRHGTARGLAVYGTDTHSAIDADTAVPQPDELTQWLADRNEPCGNTRDALAAIERRLEEAQTDEKLSHNWAAR
SIO_010081: AS9A_RS22000
subclass of: SO_0000673
so part of: AS9A_RS22000
location: complement(11586..11915)
location: region:11586-11915:-1
so has part: feature:11586-11915:-1:exon

WP_041452393.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11586-11915:-1:exon

AS9A_RS22005
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22005
old locus tag: AS9A_P10022
so part of: sequence
location: complement(11915..12301)
location: region:11915-12301:-1
so has part: feature:11915-12301:-1:exon
subclass of: SO_0000010

position:12301:-1
position: 12301
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12301:-1:exon

AS9A_RS22005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22005
old locus tag: AS9A_P10022
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MASKQNPVTVRAQARQRTLGALARRRQRDELNATRLEEFFTAAEREAAIDHDTEREIAAVREKAAARKHALTDTKHAALAGIHSNGETASTIAQWTGLPAKDIRALLHHTSAPAATPAAHDPAITGAD
SIO_010081: AS9A_RS22005
subclass of: SO_0000673
so part of: AS9A_RS22005
location: complement(11915..12301)
location: region:11915-12301:-1
so has part: feature:11915-12301:-1:exon

WP_148262659.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11915-12301:-1:exon

AS9A_RS22010
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
gene: mobF
locus tag: AS9A_RS22010
old locus tag: AS9A_P10024
so part of: sequence
location: 12488..16834
location: region:12488-16834:1
so has part: feature:12488-16834:1:exon
subclass of: SO_0000010

position:12488:1
position: 12488
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16834:1
position: 16834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12488-16834:1:exon

AS9A_RS22010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
gene: mobF
locus tag: AS9A_RS22010
old locus tag: AS9A_P10024
inference: COORDINATES: protein motif:HMM:NF041492.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobF family relaxase
translation: MTLHVLHAGDGYAYLTRQVASMDRARERGDALASYYAEHGTPPGVWLGSGLASLAGSGPDPAVAAVSGMVSEAQMRALFGEGLHPNANEIAAAVITAASTPRQLRSAVRTAETATRLGRRFPVFANDNPLRDAFSEAVTGFERQQDRPATTAERAGLWRAVGAPLFEDKHGRPAATERELVAWIAWQRGTDRQPVAGYDLVFTPAKSVSVLWALGNDQVRDAVTKAHHDAVKDALGWLETEAAFTRRGAGGIEQIDTTGLIVAAFDHFDNRAGEPNLHTHCAVSNKVCGADGKWSALDGAALHRHATAAAARYNAAVVDNLRRSLGIGFTVREMGAGKQPVVEIAGIDQSLCDAFATRSAAIRARRDDLVTEFRRTHGYSPDAKTLYRLAQQATLDTREGKQAPQSLAGMRAQWRAAAAAHLGGEDAVEAMLEHALTGQGASAAAAVVRGFLGVEHEAALVLEYVAGRRATFTAAQVRTRAEAQLALVAFPTAQARRDAIDTVINRALTPRGNEHTTTRGDHAVALTAPETVPVPGRLKRADGESVLTRHGETRYTTLSVLHAEQALLDAAATPTAYFTSHAELRATAAALKKETGRGLNGGQWEIARHFCLSGARVAVATGPAGAGKTTAMKLVADTWKQSGRDVIALAPSAVAADTLGTEIGAPAATLASLTYPYRGRIDGIQQGTIPRKIRPGTMLLVDEAAMASLPDLAALHEIADRTGAVIRLLGDPAQLDAVETGGTLRLLADHTRAPELDAVVRFGDDHAQAIASLRLRAGNPQGLALYAQRGWIHDGTRHDLLEQAAAAYLTDRNKGRTSIVLAATRDDVRALNQLLQTATNHTATTTAADTAAATADSSSSDGSGGNSNSSAGGGRVVRLCDGATARIGDTIVTRHNDPALRVKAGSRPGERVRNGDLWTITAVHEDGSAGARNLASRGAVTLPAGYVTTHVELGYACTIHRAQGVTVDTTHALITGHTSRAGLYVAATRGRTENHLYVPTDTLDIDTEPIHLTPSSSEAGTEMVLERLTTVLERDQGQSSATETLREVLRAADDPQHLHAAYITACDALTRDYLDWLIDRSLPAAITETMRAHPGTHAALNARLTALTHHGHDTTHLLTHAIHTHDPTTPADVNTLLLQHLPHPTPAPSGSEVVTRDLGVLPPRHPGMDHQLADYARTARNELTQPVPGSGPRARGDAVVVAELRDNPIRQLPDAQLRRIASGHDPRRGTDATIVMAGHSALTQAEHAHARARAGLTRLTQAHTAWQNYTRAAQEAESLDTQRHDLTGEIRRLETERARLGIFARARRRELDTTLARLTATHTGLDTQVRAAWQHAHQLKPAGPPVTSEQITHAENRVTATAAQVDTTCASHTRRTEQIHREQHHRQSSAQQELHRREHLTPEQHAQEQRLREHHTRQKNTQKQGRFSPSLALDRGPSRSPDGHGIGD
SIO_010081: AS9A_RS22010
subclass of: SO_0000673
so part of: AS9A_RS22010
location: 12488..16834
location: region:12488-16834:1
so has part: feature:12488-16834:1:exon

WP_083826721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12488-16834:1:exon

AS9A_RS22015
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22015
old locus tag: AS9A_P10025
so part of: sequence
location: 17026..17307
location: region:17026-17307:1
so has part: feature:17026-17307:1:exon
subclass of: SO_0000010

position:17026:1
position: 17026
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17307:1
position: 17307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17026-17307:1:exon

AS9A_RS22015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22015
old locus tag: AS9A_P10025
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEEPVADVDALAAWSAIAARVEHGESVPFIAHGKQVGYIVPVGELERLQETIAVLSDPDTIADLRDRTSEDQLAGVEALHELLAARRSAGKR
SIO_010081: AS9A_RS22015
subclass of: SO_0000673
so part of: AS9A_RS22015
location: 17026..17307
location: region:17026-17307:1
so has part: feature:17026-17307:1:exon

WP_013798049.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17026-17307:1:exon

AS9A_RS22020
type: Gene
subclass of: SO_0000704
RO_0002162: 443218
locus tag: AS9A_RS22020
old locus tag: AS9A_P10026
so part of: sequence
location: 17342..17647
location: region:17342-17647:1
so has part: feature:17342-17647:1:exon
subclass of: SO_0000010

position:17342:1
position: 17342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17647:1
position: 17647
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17342-17647:1:exon

AS9A_RS22020
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 443218
locus tag: AS9A_RS22020
old locus tag: AS9A_P10026
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018785627.1
GO function: GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO process: GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MSTPEHEHDDEQRQPYTLTLRRPARRALAEELPLEAAMAVGELLSGDLLTSPRRVGKRLYPPLNHLYSARRGEYRILYEINDHTRTVTVASIRHRRDAYHT
SIO_010081: AS9A_RS22020
subclass of: SO_0000673
so part of: AS9A_RS22020
location: 17342..17647
location: region:17342-17647:1
so has part: feature:17342-17647:1:exon

WP_013798050.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17342-17647:1:exon