Xanthomonas perforans strain GEV872 plasmid pGEV872.3, complete sequence.
Xanthomonas perforans (Xanthomonas euvesicatoria pv. perforans)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Estimating rates of bacterial mutation during epidemic
Submitted (16-JAN-2023) Plant Pathology, University of Florida, 2550 Hull Rd, Gainesville, Fl 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP116308.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-AUG-2021\nAssembly Method :: Canu v. 2.1\nAssembly Name :: UFL_GEV872_pb1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1100x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/27/2023 07:36:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,515\nCDSs (total) :: 4,419\nGenes (coding) :: 4,330\nCDSs (with protein) :: 4,330\nGenes (RNA) :: 96\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 35\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 45 of 89\nPseudo Genes (incomplete) :: 47 of 89\nPseudo Genes (internal stop) :: 18 of 89\nPseudo Genes (multiple problems) :: 17 of 89\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017173683.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017172800.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017154709.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154710.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173681.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172840.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172839.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154716.1
ParC family partition-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_017154717.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154806.1
COORDINATES: similar to AA sequence:RefSeq:WP_017166843.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154720.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154721.1
COORDINATES: similar to AA sequence:RefSeq:WP_014508712.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154723.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173688.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154725.1
COORDINATES: similar to AA sequence:RefSeq:WP_017154701.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_017173685.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017154703.1
COORDINATES: similar to AA sequence:RefSeq:WP_017173684.1
type IV secretion system DNA-binding domain-containing protein