Xanthomonas perforans strain GEV872 plasmid pGEV872.2.
Xanthomonas perforans (Xanthomonas euvesicatoria pv. perforans)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Estimating rates of bacterial mutation during epidemic
Submitted (16-JAN-2023) Plant Pathology, University of Florida, 2550 Hull Rd, Gainesville, Fl 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP116307.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-AUG-2021\nAssembly Method :: Canu v. 2.1\nAssembly Name :: UFL_GEV872_pb1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1100x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/27/2023 07:36:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,515\nCDSs (total) :: 4,419\nGenes (coding) :: 4,330\nCDSs (with protein) :: 4,330\nGenes (RNA) :: 96\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 35\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 45 of 89\nPseudo Genes (incomplete) :: 47 of 89\nPseudo Genes (internal stop) :: 18 of 89\nPseudo Genes (multiple problems) :: 17 of 89\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
XopE/AvrPphe family type III secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_005933836.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017160582.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160583.1
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013847909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015718869.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017160643.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329509.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368856.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368854.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113814.1
COORDINATES: similar to AA sequence:RefSeq:WP_017162873.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007968825.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363048.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462641.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015462642.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007968816.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015462644.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007968813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329497.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160641.1
COORDINATES: protein motif:HMM:NF014581.2
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012431262.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012329494.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006257761.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363027.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_007968805.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363021.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329488.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329487.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462656.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363013.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_007968798.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160625.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363005.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010363003.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017115798.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329479.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368847.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368838.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368836.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368834.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368832.1
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012329466.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163243.1
COORDINATES: similar to AA sequence:RefSeq:WP_012806129.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170487.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113411.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017160644.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163772.1
COORDINATES: similar to AA sequence:RefSeq:WP_017159860.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007971051.1
COORDINATES: similar to AA sequence:RefSeq:WP_017157773.1