Xanthomonas perforans strain GEV872 plasmid pGEV872.1.
Xanthomonas perforans (Xanthomonas euvesicatoria pv. perforans)
Bacteria; Pseudomonadota; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.
Estimating rates of bacterial mutation during epidemic
Submitted (16-JAN-2023) Plant Pathology, University of Florida, 2550 Hull Rd, Gainesville, Fl 32611, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP116306.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 08-AUG-2021\nAssembly Method :: Canu v. 2.1\nAssembly Name :: UFL_GEV872_pb1.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 1100x\nSequencing Technology :: PacBio Sequel; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 01/27/2023 07:36:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,515\nCDSs (total) :: 4,419\nGenes (coding) :: 4,330\nCDSs (with protein) :: 4,330\nGenes (RNA) :: 96\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 35\nPseudo Genes (total) :: 89\nCDSs (without protein) :: 89\nPseudo Genes (ambiguous residues) :: 0 of 89\nPseudo Genes (frameshifted) :: 45 of 89\nPseudo Genes (incomplete) :: 47 of 89\nPseudo Genes (internal stop) :: 18 of 89\nPseudo Genes (multiple problems) :: 17 of 89\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017162873.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017163694.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163695.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238174.1
COORDINATES: protein motif:HMM:NF021981.2
COORDINATES: similar to AA sequence:RefSeq:WP_017113463.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017114728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113465.1
IncP-type conjugal transfer protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_006451398.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611493.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007974941.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007968746.1
COORDINATES: similar to AA sequence:RefSeq:WP_005995706.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005995704.1
COORDINATES: similar to AA sequence:RefSeq:WP_017162817.1
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_017160736.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164021.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017160738.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_019238158.1
COORDINATES: similar to AA sequence:RefSeq:WP_019238157.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_017113420.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490070.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575015.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164027.1
COORDINATES: similar to AA sequence:RefSeq:WP_005997465.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017164029.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164030.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490060.1
COORDINATES: similar to AA sequence:RefSeq:WP_017166310.1
COORDINATES: similar to AA sequence:RefSeq:WP_005998075.1
COORDINATES: similar to AA sequence:RefSeq:WP_005998076.1
COORDINATES: similar to AA sequence:RefSeq:WP_005918295.1
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_007973141.1
COORDINATES: similar to AA sequence:RefSeq:WP_005989203.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113485.1
COORDINATES: similar to AA sequence:RefSeq:WP_099982816.1
type III secretion system YopJ family effector AvrBsT
COORDINATES: similar to AA sequence:RefSeq:WP_011347479.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017158590.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005993569.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160567.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113440.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113441.1
COORDINATES: similar to AA sequence:RefSeq:WP_017164699.1
COORDINATES: similar to AA sequence:RefSeq:WP_017163878.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113444.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113443.1