Methylorubrum populi BJ001 plasmid pMPOP02, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylorubrum.
Complete genome sequences of six strains of the genus Methylobacterium
Complete sequence of plamid2 of Methylobacterium populi BJ001
Submitted (03-APR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001031.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4003782\nSource DNA and bacteria available from Christopher Marx\n(cmarx@oeb.harvard.edu)\nContacts: Christopher Marx (cmarx@oeb.harvard.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/24/2023 13:06:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,542\nCDSs (total) :: 5,467\nGenes (coding) :: 5,376\nCDSs (with protein) :: 5,376\nGenes (RNA) :: 75\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 4\nPseudo Genes (total) :: 91\nCDSs (without protein) :: 91\nPseudo Genes (ambiguous residues) :: 0 of 91\nPseudo Genes (frameshifted) :: 31 of 91\nPseudo Genes (incomplete) :: 72 of 91\nPseudo Genes (internal stop) :: 18 of 91\nPseudo Genes (multiple problems) :: 23 of 91\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF016990.2
GO:0016032 - viral process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011581223.1
COORDINATES: similar to AA sequence:RefSeq:WP_011314885.1
COORDINATES: similar to AA sequence:RefSeq:WP_011581221.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020187101.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_018391059.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF018497.2
phage tail length tape measure family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010339851.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010339850.1
COORDINATES: similar to AA sequence:RefSeq:WP_010339849.1
COORDINATES: similar to AA sequence:RefSeq:WP_012449407.1
GO:0004803 - transposase activity [Evidence IEA]
Tn3-like element ISMpo10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_018046181.1
COORDINATES: similar to AA sequence:RefSeq:WP_005176595.1
COORDINATES: protein motif:HMM:TIGR01537.1
COORDINATES: similar to AA sequence:RefSeq:WP_008597078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013166862.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013166863.1
COORDINATES: protein motif:HMM:NF020392.2
COORDINATES: similar to AA sequence:RefSeq:WP_011840290.1
COORDINATES: protein motif:HMM:NF017726.2