Thauera aromatica K172 plasmid pKJK172, complete sequence.
Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Thauera.
Complete genome sequence of Thauera aromatica, a model organism for studying aromatic compound degradation under denitrifying conditions
Submitted (27-MAR-2018) Environmental Biotechnology, Helmholtz-UFZ, Permoserstr. 15, Leipzig, Saxony 04318, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP028340.1.\nBacteria and source DNA available from Helmholtz Centre for\nEnvironmental Research.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2017\nAssembly Method :: ABySS v. June-2017\nExpected Final Version :: yes\nGenome Coverage :: 40.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2022 02:42:10\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.1\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,510\nCDSs (total) :: 3,435\nGenes (coding) :: 3,374\nCDSs (with protein) :: 3,374\nGenes (RNA) :: 75\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 61\nCDSs (without protein) :: 61\nPseudo Genes (ambiguous residues) :: 0 of 61\nPseudo Genes (frameshifted) :: 12 of 61\nPseudo Genes (incomplete) :: 54 of 61\nPseudo Genes (internal stop) :: 0 of 61\nPseudo Genes (multiple problems) :: 5 of 61\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011114072.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
single strand DNA stabilisation during replication
COORDINATES: similar to AA sequence:RefSeq:WP_011798708.1
COORDINATES: similar to AA sequence:RefSeq:WP_011988477.1
COORDINATES: similar to AA sequence:RefSeq:WP_000132020.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114046.1
COORDINATES: similar to AA sequence:RefSeq:WP_010676131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011013264.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_011255079.1
COORDINATES: similar to AA sequence:RefSeq:WP_000753228.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_011798704.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114050.1
involved in conjugal transfer/entry exclusion
COORDINATES: similar to AA sequence:RefSeq:WP_011255135.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_019097567.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0009292 - genetic transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014579505.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_010676139.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011255071.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011798697.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798696.1
COORDINATES: similar to AA sequence:RefSeq:WP_001665065.1
COORDINATES: similar to AA sequence:RefSeq:WP_013397084.1
COORDINATES: similar to AA sequence:RefSeq:WP_014708267.1
putatively involved in plasmid stabilization
COORDINATES: similar to AA sequence:RefSeq:WP_017161196.1
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003159187.1
COORDINATES: similar to AA sequence:RefSeq:WP_017172645.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019334760.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009602860.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221021.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015059985.1
COORDINATES: similar to AA sequence:RefSeq:WP_000679427.1
GO:0016021 - integral component of membrane [Evidence IEA]
quaternary ammonium compound efflux SMR transporter QacE delta 1
COORDINATES: similar to AA sequence:RefSeq:WP_000259031.1
sulfonamide-resistant dihydropteroate synthase Sul1
COORDINATES: similar to AA sequence:RefSeq:WP_004194535.1
COORDINATES: similar to AA sequence:RefSeq:WP_011515356.1
COORDINATES: similar to AA sequence:RefSeq:WP_001324342.1
IS21-like element IS1326 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
tetracycline resistance transcriptional repressor TetR(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
tetracycline efflux MFS transporter Tet(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000493383.1
COORDINATES: similar to AA sequence:RefSeq:WP_013124600.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229646.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122509.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005221527.1
relaxation of negatively supercoiled DNA
COORDINATES: similar to AA sequence:RefSeq:WP_010676165.1
peptidase / maturation of TrbC pilin protein
COORDINATES: similar to AA sequence:RefSeq:WP_000086826.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_011655356.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011137971.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000426567.1
conjugal transfer transcriptional regulator TraJ
COORDINATES: similar to AA sequence:RefSeq:WP_017161206.1
COORDINATES: similar to AA sequence:RefSeq:WP_011304098.1
COORDINATES: similar to AA sequence:RefSeq:WP_000718516.1
COORDINATES: similar to AA sequence:RefSeq:WP_017842775.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798727.1
COORDINATES: similar to AA sequence:RefSeq:WP_017170475.1
putative transcriptional repressor protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890108.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011114061.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890110.1
COORDINATES: protein motif:HMM:NF022412.2
involved in plasmid maintenance and stabibily
COORDINATES: similar to AA sequence:RefSeq:WP_012478184.1
COORDINATES: similar to AA sequence:RefSeq:WP_011205838.1
COORDINATES: similar to AA sequence:RefSeq:WP_014579472.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890115.1
COORDINATES: similar to AA sequence:RefSeq:WP_020565915.1
COORDINATES: similar to AA sequence:RefSeq:WP_011137973.1