Crocosphaera subtropica ATCC 51142 plasmid pC, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Crocosphaera; Crocosphaera subtropica.
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
Submitted (22-AUG-2007) Department of Biology, Washington University in Saint Louis, One Brookings Drive, Campus Box 1137, Saint Louis, MO 63130, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000810.1.\nBacteria available from the ATCC Cell Biology Collection: ATCC\n51142. Products annotated as 'unknown' have been observed in\nhigh-throughput proteomics experiments. Products annotated as\n'conserved hypothetical protein' have orthologs in at least 6 other\ncyanobacterial genomes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 01:44:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,090\nCDSs (total) :: 5,037\nGenes (coding) :: 4,957\nCDSs (with protein) :: 4,957\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 20 of 80\nPseudo Genes (incomplete) :: 48 of 80\nPseudo Genes (internal stop) :: 24 of 80\nPseudo Genes (multiple problems) :: 9 of 80\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Crocosphaera subtropica
COORDINATES: protein motif:HMM:NF027286.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547965.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547966.1
PEP-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009547967.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547968.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009547970.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547972.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547974.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547956.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547958.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214126.1
COORDINATES: similar to AA sequence:RefSeq:WP_011320000.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009546961.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547962.1
ssl1498 family light-harvesting-like protein
COORDINATES: protein motif:HMM:NF022172.2