Crocosphaera subtropica ATCC 51142 plasmid pC, complete sequence.
type: Entry
definition: Crocosphaera subtropica ATCC 51142 plasmid pC, complete sequence.
sequence version: NC_010542.1
sequence date: 2023-04-17
sequence: sequence
division: CON
label: NC_010542.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN02604312
keyword: RefSeq
source: Crocosphaera subtropica ATCC 51142
organism: Crocosphaera subtropica ATCC 51142
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Crocosphaera; Crocosphaera subtropica.
reference: 1
references: 18812508
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP000810.1.\nBacteria available from the ATCC Cell Biology Collection: ATCC\n51142. Products annotated as 'unknown' have been observed in\nhigh-throughput proteomics experiments. Products annotated as\n'conserved hypothetical protein' have orthologs in at least 6 other\ncyanobacterial genomes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 01:44:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,090\nCDSs (total) :: 5,037\nGenes (coding) :: 4,957\nCDSs (with protein) :: 4,957\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 20 of 80\nPseudo Genes (incomplete) :: 48 of 80\nPseudo Genes (internal stop) :: 24 of 80\nPseudo Genes (multiple problems) :: 9 of 80\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 14685
topology: circular
so has quality: SO_0000988
location: 1..14685
location: region:1-14685:1
RO_0002162: 43989

NC_010542
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN02604312
type: BioSample
SIO_000068: biosample

1
title: The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
author: Welsh, E.A.
author: Liberton, M.
author: Stockel, J.
author: Loh, T.
author: Elvitigala, T.
author: Wang, C.
author: Wollam, A.
author: Fulton, R.S.
author: Clifton, S.W.
author: Jacobs, J.M.
author: Aurora, R.
author: Ghosh, B.K.
author: Sherman, L.A.
author: Smith, R.D.
author: Wilson, R.K.
author: Pakrasi, H.B.
journal: Proc Natl Acad Sci U S A
volume: 105
issue: 39
pages: 15094-15099
year: 2008
pubmed: 18812508

18812508
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Welsh, E.A.
author: Liberton, M.
author: Stockel, J.
author: Sato, H.
author: Loh, T.
author: Wang, C.
author: Wollam, A.
author: Fulton, R.S.
author: Clifton, S.W.
author: Jacobs, J.M.
author: Aurora, R.
author: Sherman, L.A.
author: Smith, R.D.
author: Wilson, R.K.
author: Pakrasi, H.B.
journal: Submitted (22-AUG-2007) Department of Biology, Washington University in Saint Louis, One Brookings Drive, Campus Box 1137, Saint Louis, MO 63130, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14685:1
position: 14685
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14685:1:source
so part of: sequence
organism: Crocosphaera subtropica ATCC 51142
mol type: genomic DNA
strain: ATCC 51142
culture collection: ATCC:51142
type material: reference strain of Crocosphaera subtropica
plasmid: pC

43989
type: Taxonomy
SIO_000068: taxonomy

CCE_RS24865
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24865
old locus tag: cce_5281
so part of: sequence
location: 38..700
location: region:38-700:1
so has part: feature:38-700:1:exon
subclass of: SO_0000010

position:38:1
position: 38
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:700:1
position: 700
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38-700:1:exon

CCE_RS24865
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24865
old locus tag: cce_5281
inference: COORDINATES: protein motif:HMM:NF027286.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4760 domain-containing protein
translation: MNRSTGQISRLEFQITLTIGLIVSLGISIIIGAYFSVTQNKTLEEKKEARETISFIAGILGAGLGIVSAFYAVDSISRNSQTSKINRAINIISEWNNIDFQDYKDVLGELRSKTQQLKKNNGENASEAEKGYIINEIIESDFGYVGKILGYLNFLEYVSLLVETNCVDEDMIYEYFVVIFIKADDLLGLWIKQRQKDSNNYKIYDQFIKVTNKWRLRYEK
SIO_010081: CCE_RS24865
subclass of: SO_0000673
so part of: CCE_RS24865
location: 38..700
location: region:38-700:1
so has part: feature:38-700:1:exon

WP_009547964.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38-700:1:exon

CCE_RS24870
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24870
old locus tag: cce_5282
so part of: sequence
location: complement(1080..3563)
location: region:1080-3563:-1
so has part: feature:1080-3563:-1:exon
subclass of: SO_0000010

position:1080:-1
position: 1080
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3563:-1
position: 3563
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1080-3563:-1:exon

CCE_RS24870
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24870
old locus tag: cce_5282
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547965.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKTGKQQNYQHLTPSTVTGQRLTQYYHHGWDFILEIDDKWTTINIYPLSPREIWDKHQDPQITIGLRFGSTTRHITIDIDRNSPYHPFNDPDAIKTITEALESIGLCRHVLIQSSDSQGIHLIFALPEPLHTFKTACLVKATLEAAQLEIKTGQLEIFPNPKRYAKNGKKSCYNGVRLPLQPNSGSYLLDQDLNIISDSVEDFLDQMDWAAEGQDIETFSSRLDVAYQEFKAQRSWQKAYYSPTAIAWKQALEKLLELGWTGHHQTNYLLTKFVAYHIVFKELTGAKLRAAVIEEVINAPGYNQWCRHQHEIEQRIEEICYYTERNEYYLPYCNYPNRSSNYNQTYNKSMDKTPRTLDIEKRITETVAHLEANGELPQKVVERRQAIIKIAKEKYGTGFSNRTLSQKKYLALWHPKYRSNQEKMQSHSQRETASITEPQKSPETDQTAPPTKQAETHSQSESASYTPIYEVFEGLEFDPQKKSKNNPTTFQKSKPPTDPPLSDAPVQLSELPDDLPDHLANRLASVHSAKQAFLNLGLFIPYGLKRLEAELMAEIAQLTPSNDESITKPNQPPSNGKIDAVEDTTEPTPSTPEAPQVDDTTNQSPTIEQTLEIEEGRLQIDQNNQPLSTNQRKINNHESPTSVKQPGVNLKSPICNLQSHDNNQFLSSTNGQPRKLSKKKLLEKCDDYGIEVNRTIERLIKSNTSEVVLNALEALREHKRQGQVKNPAGFLVKAIKQKWKPTTATNTPQTSSKPSSSPYLSNPTAGITDEFLQWYEKQIARGLVENVPVHHLPLYQHREPMVKVLTPDGKFPFDLMRWTRARDIF
SIO_010081: CCE_RS24870
subclass of: SO_0000673
so part of: CCE_RS24870
location: complement(1080..3563)
location: region:1080-3563:-1
so has part: feature:1080-3563:-1:exon

WP_009547965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1080-3563:-1:exon

CCE_RS24875
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24875
old locus tag: cce_5283
so part of: sequence
location: 4302..4625
location: region:4302-4625:1
so has part: feature:4302-4625:1:exon
subclass of: SO_0000010

position:4302:1
position: 4302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4625:1
position: 4625
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4302-4625:1:exon

CCE_RS24875
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24875
old locus tag: cce_5283
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547966.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PEP-CTERM sorting domain-containing protein
translation: MFPKTGELVEQLKFVIPVGTQFLVNDLTANNVDISLCTSTCEEVPFWMTNDGKIDPAISGFGFKDDPAGGTYDASSITTQKAPEPGTILGLLAISGLGLGLKRKKQS
SIO_010081: CCE_RS24875
subclass of: SO_0000673
so part of: CCE_RS24875
location: 4302..4625
location: region:4302-4625:1
so has part: feature:4302-4625:1:exon

WP_009547966.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4302-4625:1:exon

CCE_RS24880
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
gene: mobQ
locus tag: CCE_RS24880
old locus tag: cce_5284
so part of: sequence
location: complement(4908..6644)
location: region:4908-6644:-1
so has part: feature:4908-6644:-1:exon
subclass of: SO_0000010

position:4908:-1
position: 4908
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6644:-1
position: 6644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4908-6644:-1:exon

CCE_RS24880
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
gene: mobQ
locus tag: CCE_RS24880
old locus tag: cce_5284
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547967.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLNAKIISRSNGQSATEAAAYRAAEKIHDLRIGETFNYTRKKGVYATEILTPHNAPNWMADRSQLWNAAELFEKRSNSRTAREFDIALPTELTHPQKQELVRNFAQDNFVDKGLVADLAFHEINTHNPHVHIMITTRIVDENGLGAKDRSLDKKDFLLKLRESWATYTNDALESIGSSEKIDHRSLKEQNISRIPQIHLGANVAAMMKRGIATERGDEYLEIKTTNEQIEALEKQLVTVENSIKSETLLIQNSSAKNSSLLTVDADADIDKTTLELSQNLTTHRINNDGDERERSEDSEADLTAELRRINEAVIESNRQADENRQRLQDLSNRLGNDGRKTRKSRKSTQQKRPTSSSKSQTSSEQFNLPDKRTERKLSSHLEGSTVRETGNQKTPRQRDNVPSPNSPKIDRTDSDNLQSRNLDVNQTPSPQQSPTGENQRTSQQHRNQAQSNGEKQSLTPEQRQQDFNNVIVVSTAIRLMRYVKAKPKNGFSTYEGKRYIFKLSTDKQTMELHAKDGRGLIFERKDGKVTANLTDEDRKMIHDVDSQISQRIAQLQRDFEQREKQRCRGRGFSR
SIO_010081: CCE_RS24880
subclass of: SO_0000673
so part of: CCE_RS24880
location: complement(4908..6644)
location: region:4908-6644:-1
so has part: feature:4908-6644:-1:exon

WP_009547967.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4908-6644:-1:exon

CCE_RS24885
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24885
old locus tag: cce_5286
so part of: sequence
location: 6884..7495
location: region:6884-7495:1
so has part: feature:6884-7495:1:exon
subclass of: SO_0000010

position:6884:1
position: 6884
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7495:1
position: 7495
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6884-7495:1:exon

CCE_RS24885
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24885
old locus tag: cce_5286
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547968.1
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosomal protein L7/L12
translation: MTKKLEKLLEQREKINARIQKARARETAQKRKEDTRRKILLGALVIEMMDKGELDDGVIMKRLEGFLTRDIDRKLFDFPVQGDSDSTETTSDKKPTSSKKTTESKGAKKGSSASQSSEGKIADLIRTEVEGSSVEIILEEYPSDQKMAILRTVREVTNLGLKEAKDLIESTPCVIHKTTQSSADGAKKKLEKFGAKVSLKVDS
SIO_010081: CCE_RS24885
subclass of: SO_0000673
so part of: CCE_RS24885
location: 6884..7495
location: region:6884-7495:1
so has part: feature:6884-7495:1:exon

WP_009547968.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6884-7495:1:exon

CCE_RS27015
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS27015
old locus tag: cce_5287
so part of: sequence
location: complement(7500..7634)
location: region:7500-7634:-1
so has part: feature:7500-7634:-1:exon
subclass of: SO_0000010

position:7500:-1
position: 7500
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7634:-1
position: 7634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7500-7634:-1:exon

CCE_RS27015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS27015
old locus tag: cce_5287
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEIDRIPLSQLPNRYGIARSAVYTRLKDLQIEPITEAFSKAFDP
SIO_010081: CCE_RS27015
subclass of: SO_0000673
so part of: CCE_RS27015
location: complement(7500..7634)
location: region:7500-7634:-1
so has part: feature:7500-7634:-1:exon

WP_009547969.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7500-7634:-1:exon

CCE_RS24890
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24890
old locus tag: cce_5288
so part of: sequence
location: 7772..7978
location: region:7772-7978:1
so has part: feature:7772-7978:1:exon
subclass of: SO_0000010

position:7772:1
position: 7772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7978:1
position: 7978
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7772-7978:1:exon

CCE_RS24890
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24890
old locus tag: cce_5288
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547970.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIEQQDFDDKPEWLVSVLKELEAYDKMGKEDKKKTFQELEKRIKKEALLEEQVENLGKNYLNNQDKN
SIO_010081: CCE_RS24890
subclass of: SO_0000673
so part of: CCE_RS24890
location: 7772..7978
location: region:7772-7978:1
so has part: feature:7772-7978:1:exon

WP_009547970.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7772-7978:1:exon

CCE_RS24895
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24895
old locus tag: cce_5289
so part of: sequence
location: 7985..8449
location: region:7985-8449:1
so has part: feature:7985-8449:1:exon
subclass of: SO_0000010

position:7985:1
position: 7985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8449:1
position: 8449
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7985-8449:1:exon

CCE_RS24895
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24895
old locus tag: cce_5289
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MMNLKEQSKEKFLTTEEIQVLFNDGFTSEQERVFFGVMLFTGCHLHEACALETADVYDESGLVRDGIIIRNKNTLKTRIIPVCEPLRKLLSKYSLNRQERYLFPEESGGHIQSKTASRILKKACEKVGLLNVDTNIFRKTMVAQMMNRKTPFIS
SIO_010081: CCE_RS24895
subclass of: SO_0000673
so part of: CCE_RS24895
location: 7985..8449
location: region:7985-8449:1
so has part: feature:7985-8449:1:exon

WP_012358624.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7985-8449:1:exon

CCE_RS26455
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS26455
old locus tag: cce_5290
so part of: sequence
location: 8467..8631
location: region:8467-8631:1
so has part: feature:8467-8631:1:exon
subclass of: SO_0000010

position:8467:1
position: 8467
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8631:1
position: 8631
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8467-8631:1:exon

CCE_RS26455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS26455
old locus tag: cce_5290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547972.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKIDLTSEQIHYLKYLVLKGIAEAKEASAPESQKIYETILLALDQEVREENNLN
SIO_010081: CCE_RS26455
subclass of: SO_0000673
so part of: CCE_RS26455
location: 8467..8631
location: region:8467-8631:1
so has part: feature:8467-8631:1:exon

WP_009547972.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8467-8631:1:exon

CCE_RS24900
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24900
old locus tag: cce_5291
so part of: sequence
location: 8808..9341
location: region:8808-9341:1
so has part: feature:8808-9341:1:exon
subclass of: SO_0000010

position:8808:1
position: 8808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9341:1
position: 9341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8808-9341:1:exon

CCE_RS24900
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24900
old locus tag: cce_5291
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQRELSEKEFNQYHDLNKVKESLKLFVKHNSIFENSYQDEDEIWRDYKTNIESLEIEEISIEYKEESAECTAAFQPEVTSGWVGGNINYNDITCYDFVASFSVDLTIEFDYYLGPNYTQKASFKKNSKDSVTVCFTFDEDFDFKLEWWEFENSYLGDPEYEKAYDLLVDWLSFSTS
SIO_010081: CCE_RS24900
subclass of: SO_0000673
so part of: CCE_RS24900
location: 8808..9341
location: region:8808-9341:1
so has part: feature:8808-9341:1:exon

WP_009547973.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8808-9341:1:exon

CCE_RS24905
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24905
old locus tag: cce_5292
so part of: sequence
location: complement(9440..9889)
location: region:9440-9889:-1
so has part: feature:9440-9889:-1:exon
subclass of: SO_0000010

position:9440:-1
position: 9440
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9889:-1
position: 9889
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9440-9889:-1:exon

CCE_RS24905
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24905
old locus tag: cce_5292
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547974.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKTANLSKVIEAALNYAKGKVNHVIEYQESEGYICSENDVFIRAIFQADDVEECHRAFPRSGNPTGVARQHFYFYTYLQKEFYQEDNEEETLDLSEVLIQEAYLDPDGSFNLFEHGYGHPLEQEELDKAVWKSSEEETPIWARIMELS
SIO_010081: CCE_RS24905
subclass of: SO_0000673
so part of: CCE_RS24905
location: complement(9440..9889)
location: region:9440-9889:-1
so has part: feature:9440-9889:-1:exon

WP_009547974.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9440-9889:-1:exon

CCE_RS24910
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24910
old locus tag: cce_5293
so part of: sequence
location: complement(9983..10579)
location: region:9983-10579:-1
so has part: feature:9983-10579:-1:exon
subclass of: SO_0000010

position:9983:-1
position: 9983
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10579:-1
position: 10579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9983-10579:-1:exon

CCE_RS24910
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24910
old locus tag: cce_5293
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547956.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MATNEWLKNHAKVTAYLDLSLYSSLETWMKTHKIKKVSQALVIILEHYLEGNIPTEVLPETLEEEVKNLKVKTTEIDDLSATVAEQESEFTDEIESLRTEIDQLRQALINTGLSSLKEKFEDIPRGNIEFTCSDTEISEGLTKTDLCKKINLTSSQINQWASRLNLNPDDYLLELTGWHKPPSQRRYFPSSDAPDDDE
SIO_010081: CCE_RS24910
subclass of: SO_0000673
so part of: CCE_RS24910
location: complement(9983..10579)
location: region:9983-10579:-1
so has part: feature:9983-10579:-1:exon

WP_009547956.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9983-10579:-1:exon

CCE_RS24920
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24920
old locus tag: cce_5294
so part of: sequence
location: complement(11734..12318)
location: region:11734-12318:-1
so has part: feature:11734-12318:-1:exon
subclass of: SO_0000010

position:11734:-1
position: 11734
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12318:-1
position: 12318
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11734-12318:-1:exon

CCE_RS24920
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24920
old locus tag: cce_5294
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547958.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MKVNRYGRAEILTSDQISLLFTEGFLNPRDKALFGICLYAAARINEAVTLFYGDVIGIKGIREKLVIRSFNTKGKQDTREIDIHPRLTQYLQEYQDSYPSLNKYNPNLFPGRHGRGHIHKASADRILRGICKKLEIEGVSTHSFRRTALTQMSDAGVPLRHIQAISGHRTLAALERYLGVTDKQKQHAISTLDF
SIO_010081: CCE_RS24920
subclass of: SO_0000673
so part of: CCE_RS24920
location: complement(11734..12318)
location: region:11734-12318:-1
so has part: feature:11734-12318:-1:exon

WP_009547958.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11734-12318:-1:exon

CCE_RS24925
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24925
old locus tag: cce_5295
so part of: sequence
location: 12524..12790
location: region:12524-12790:1
so has part: feature:12524-12790:1:exon
subclass of: SO_0000010

position:12524:1
position: 12524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12790:1
position: 12790
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12524-12790:1:exon

CCE_RS24925
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24925
old locus tag: cce_5295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015214126.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MESLKIRSRVDADGVVRLQVPVELANSEIDLVVVYQTVEKSRESKESKTATELGYPEDFFDSTFGCWEGEPLTRGEQGECDQRRWDLL
SIO_010081: CCE_RS24925
subclass of: SO_0000673
so part of: CCE_RS24925
location: 12524..12790
location: region:12524-12790:1
so has part: feature:12524-12790:1:exon

WP_009547959.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12524-12790:1:exon

CCE_RS24930
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24930
old locus tag: cce_5296
so part of: sequence
location: 12787..13188
location: region:12787-13188:1
so has part: feature:12787-13188:1:exon
subclass of: SO_0000010

position:12787:1
position: 12787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13188:1
position: 13188
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12787-13188:1:exon

CCE_RS24930
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24930
old locus tag: cce_5296
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011320000.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MIYLLDTNTCIQYLTGRSPAVMARFKRVRRVEIALCDVVKAELYYGANKSSRREANLALYERFFSQYVSLPFDGTAAIIYGRLRATLEAVGQPIGPYDLMIAAISLANNLILVTHNVDEFSRVEGLTIEDWEV
SIO_010081: CCE_RS24930
subclass of: SO_0000673
so part of: CCE_RS24930
location: 12787..13188
location: region:12787-13188:1
so has part: feature:12787-13188:1:exon

WP_009547960.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12787-13188:1:exon

CCE_RS24935
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24935
old locus tag: cce_5297
so part of: sequence
location: complement(13368..13565)
location: region:13368-13565:-1
so has part: feature:13368-13565:-1:exon
subclass of: SO_0000010

position:13368:-1
position: 13368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13565:-1
position: 13565
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13368-13565:-1:exon

CCE_RS24935
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24935
old locus tag: cce_5297
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009546961.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLNTTTNNTTIVRNYIILAATVMFASMGLTDTFFAPTRTGQQDRLNNYGQVVSAGLVSYSQKLGR
SIO_010081: CCE_RS24935
subclass of: SO_0000673
so part of: CCE_RS24935
location: complement(13368..13565)
location: region:13368-13565:-1
so has part: feature:13368-13565:-1:exon

WP_024750405.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13368-13565:-1:exon

CCE_RS26120
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS26120
old locus tag: cce_5298
so part of: sequence
location: 13885..14055
location: region:13885-14055:1
so has part: feature:13885-14055:1:exon
subclass of: SO_0000010

position:13885:1
position: 13885
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14055:1
position: 14055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13885-14055:1:exon

CCE_RS26120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS26120
old locus tag: cce_5298
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547962.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ssl1498 family light-harvesting-like protein
translation: MYTTQLDNGLTNTYAVETKPYYAEYPAPYQQRRYLIQGAVAALFVTSLVMVSAVIS
SIO_010081: CCE_RS26120
subclass of: SO_0000673
so part of: CCE_RS26120
location: 13885..14055
location: region:13885-14055:1
so has part: feature:13885-14055:1:exon

WP_009547962.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13885-14055:1:exon

CCE_RS24945
type: Gene
subclass of: SO_0000704
RO_0002162: 43989
locus tag: CCE_RS24945
old locus tag: cce_5299
so part of: sequence
location: 14428..14685
location: region:14428-14685:1
so has part: feature:14428-14685:1:exon
subclass of: SO_0000010

position:14428:1
position: 14428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14428-14685:1:exon

CCE_RS24945
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 43989
locus tag: CCE_RS24945
old locus tag: cce_5299
inference: COORDINATES: protein motif:HMM:NF022172.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2513 domain-containing protein
translation: MKLIKEILLMIENEETQKDAIFKKYSKKEVYYHNYLIYKAGLIEGNNHLLEKDAYHENWNFPIICPTIITWSGYDFLETIRDKDF
SIO_010081: CCE_RS24945
subclass of: SO_0000673
so part of: CCE_RS24945
location: 14428..14685
location: region:14428-14685:1
so has part: feature:14428-14685:1:exon

WP_157861277.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14428-14685:1:exon