Crocosphaera subtropica ATCC 51142 plasmid B, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Crocosphaera; Crocosphaera subtropica.
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
Submitted (22-AUG-2007) Department of Biology, Washington University in Saint Louis, One Brookings Drive, Campus Box 1137, Saint Louis, MO 63130, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000809.1.\nBacteria available from the ATCC Cell Biology Collection: ATCC\n51142. Products annotated as 'unknown' have been observed in\nhigh-throughput proteomics experiments. Products annotated as\n'conserved hypothetical protein' have orthologs in at least 6 other\ncyanobacterial genomes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 01:44:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,090\nCDSs (total) :: 5,037\nGenes (coding) :: 4,957\nCDSs (with protein) :: 4,957\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 20 of 80\nPseudo Genes (incomplete) :: 48 of 80\nPseudo Genes (internal stop) :: 24 of 80\nPseudo Genes (multiple problems) :: 9 of 80\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Crocosphaera subtropica
COORDINATES: similar to AA sequence:RefSeq:WP_008276295.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547885.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547886.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547887.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547888.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278103.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008278102.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009547890.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278097.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009547894.1
COORDINATES: similar to AA sequence:RefSeq:WP_007311753.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547896.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547897.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009547898.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009547899.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547900.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547901.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278188.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008278187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593109.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF015140.2
GO:0007154 - cell communication [Evidence IEA]