Crocosphaera subtropica ATCC 51142 plasmid A, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Crocosphaera; Crocosphaera subtropica.
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle
Submitted (22-AUG-2007) Department of Biology, Washington University in Saint Louis, One Brookings Drive, Campus Box 1137, Saint Louis, MO 63130, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000808.1.\nBacteria available from the ATCC Cell Biology Collection: ATCC\n51142. Products annotated as 'unknown' have been observed in\nhigh-throughput proteomics experiments. Products annotated as\n'conserved hypothetical protein' have orthologs in at least 6 other\ncyanobacterial genomes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/16/2023 01:44:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,090\nCDSs (total) :: 5,037\nGenes (coding) :: 4,957\nCDSs (with protein) :: 4,957\nGenes (RNA) :: 53\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 4\nPseudo Genes (total) :: 80\nCDSs (without protein) :: 80\nPseudo Genes (ambiguous residues) :: 0 of 80\nPseudo Genes (frameshifted) :: 20 of 80\nPseudo Genes (incomplete) :: 48 of 80\nPseudo Genes (internal stop) :: 24 of 80\nPseudo Genes (multiple problems) :: 9 of 80\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Crocosphaera subtropica
COORDINATES: similar to AA sequence:RefSeq:WP_009547728.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547727.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547726.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547725.1
COORDINATES: similar to AA sequence:RefSeq:WP_012596872.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547722.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547721.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547584.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: protein motif:HMM:NF019542.2
COORDINATES: similar to AA sequence:RefSeq:WP_019503307.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547717.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019504516.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009547937.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593017.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547748.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547747.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009547746.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547745.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547744.1
COORDINATES: similar to AA sequence:RefSeq:WP_015138862.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008278205.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547741.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547740.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547739.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547738.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547737.1
COORDINATES: protein motif:HMM:NF023276.2
COORDINATES: similar to AA sequence:RefSeq:WP_009547734.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547733.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547732.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547731.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547730.1
COORDINATES: similar to AA sequence:RefSeq:WP_009547729.1