Acetobacter pasteurianus strain CICC 22518 plasmid pAP22518-2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.
Genome sequences of Acetobacter pasteurianus CICC 22518
Submitted (29-APR-2019) College of Chemical Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao, Shandong 266580, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP039847.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. FEB-2018\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 209.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 04:47:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,854\nCDSs (total) :: 2,780\nGenes (coding) :: 2,748\nCDSs (with protein) :: 2,748\nGenes (RNA) :: 74\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 57\nncRNAs :: 5\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 13 of 32\nPseudo Genes (incomplete) :: 21 of 32\nPseudo Genes (internal stop) :: 2 of 32\nPseudo Genes (multiple problems) :: 4 of 32\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003630481.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019089348.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630483.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813210.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115557.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813212.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813213.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115554.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006115553.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626741.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007635327.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006115922.1
COORDINATES: similar to AA sequence:RefSeq:WP_010515376.1
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor [Evidence IEA]
cytochrome d ubiquinol oxidase subunit II
COORDINATES: protein motif:HMM:NF022085.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
programmed frameshift; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611628.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006116383.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003631418.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553139.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS701-like element IS1452 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_014457375.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006117386.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006117385.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003630594.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813249.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630592.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115463.1
COORDINATES: similar to AA sequence:RefSeq:WP_010667597.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019088893.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0008942 - nitrite reductase [NAD(P)H] activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0042128 - nitrate assimilation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813259.1
COORDINATES: similar to AA sequence:RefSeq:WP_006559099.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115457.1
COORDINATES: similar to AA sequence:RefSeq:WP_003626140.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_006115455.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813264.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012813265.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003626131.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813266.1
COORDINATES: similar to AA sequence:RefSeq:WP_003627302.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012812328.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_085938460.1
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006560334.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_003627393.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_008852967.1
COORDINATES: similar to AA sequence:RefSeq:WP_003629176.1
COORDINATES: protein motif:HMM:NF028182.2
putative phage abortive infection protein
COORDINATES: similar to AA sequence:RefSeq:WP_010511738.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618686.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_010510577.1
type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family
COORDINATES: similar to AA sequence:RefSeq:WP_010516402.1
COORDINATES: protein motif:HMM:NF018604.2
COORDINATES: similar to AA sequence:RefSeq:WP_012643596.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012976042.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_011746418.1
COORDINATES: protein motif:HMM:NF024934.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006115867.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512346.1
COORDINATES: similar to AA sequence:RefSeq:WP_019089623.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115869.1
COORDINATES: similar to AA sequence:RefSeq:WP_010512344.1
COORDINATES: similar to AA sequence:RefSeq:WP_014849395.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010517678.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812390.1
IS1380-like element IS1380A family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_016354593.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016919754.1
COORDINATES: similar to AA sequence:RefSeq:WP_012812701.1
delta(1)-pyrroline-2-carboxylate reductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019089655.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003631147.1
COORDINATES: similar to AA sequence:RefSeq:WP_010516894.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006115724.1
nucleotidyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813241.1
nucleotidyltransferase substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006115727.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007397884.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_006115730.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006115732.1
COORDINATES: similar to AA sequence:RefSeq:WP_003618725.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003618723.1
ArsO family NAD(P)H-dependent flavin-containing monooxygenase
COORDINATES: similar to AA sequence:RefSeq:WP_015075038.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006115735.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611877.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813271.1
COORDINATES: similar to AA sequence:RefSeq:WP_010973349.1
GO:0003871 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006560347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813352.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813353.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019088964.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092593.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115744.1
COORDINATES: similar to AA sequence:RefSeq:WP_003625690.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813354.1
COORDINATES: similar to AA sequence:RefSeq:WP_010511789.1
phosphate-starvation-inducible PsiE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611355.1
COORDINATES: similar to AA sequence:RefSeq:WP_019092589.1
COORDINATES: similar to AA sequence:RefSeq:WP_010668861.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630714.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012813198.1
COORDINATES: similar to AA sequence:RefSeq:WP_012039898.1
COORDINATES: protein motif:HMM:NF012334.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010515883.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088969.1
COORDINATES: similar to AA sequence:RefSeq:WP_007396495.1
MSMEG_0569 family flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010512402.1
MSMEG_0570 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_010515872.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003630850.1
GO:0003824 - catalytic activity [Evidence IEA]
sll0787 family AIR synthase-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_012813220.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630852.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007398732.1
GO:0000257 - nitrilase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003630856.1
MSMEG_0572 family nitrogen starvation response protein
COORDINATES: similar to AA sequence:RefSeq:WP_014106934.1
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014466413.1
COORDINATES: similar to AA sequence:RefSeq:WP_012813226.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006560294.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088886.1
COORDINATES: similar to AA sequence:RefSeq:WP_043766426.1
COORDINATES: similar to AA sequence:RefSeq:WP_006117547.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003630989.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630988.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088960.1
GO:0015291 - secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006117538.1
COORDINATES: similar to AA sequence:RefSeq:WP_006117537.1
GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011853400.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003621324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019088710.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF037100.2
COORDINATES: similar to AA sequence:RefSeq:WP_003630478.1
COORDINATES: similar to AA sequence:RefSeq:WP_006115563.1
COORDINATES: similar to AA sequence:RefSeq:WP_003630480.1