Prescottella equi strain DSSKP-R-001 plasmid plas2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Prescottella.
Full genome sequence of Rhodococcus sp. DSSKP-R-001
Submitted (13-MAR-2018) College of Life Sciences, Northeast Normal University, No. 5268, People's Street, Changchun 130024, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP027795.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. December-2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.3x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 19:14:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,201\nCDSs (total) :: 5,121\nGenes (coding) :: 5,089\nCDSs (with protein) :: 5,089\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 27 of 32\nPseudo Genes (internal stop) :: 3 of 32\nPseudo Genes (multiple problems) :: 6 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_006553226.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013265.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017681394.1
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF024064.2
ribbon-helix-helix domain-containing protein
Lrp/AsnC family transcriptional regulator
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF012974.2
DnaB-like helicase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006554213.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012836488.1
COORDINATES: similar to AA sequence:RefSeq:WP_005249417.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_005264154.1
COORDINATES: similar to AA sequence:RefSeq:WP_005264155.1
COORDINATES: similar to AA sequence:RefSeq:WP_016931852.1
COORDINATES: similar to AA sequence:RefSeq:WP_011891832.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_010842522.1
COORDINATES: similar to AA sequence:RefSeq:WP_011728944.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006245042.1
COORDINATES: similar to AA sequence:RefSeq:WP_015889016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003941048.1
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011209787.1
COORDINATES: protein motif:HMM:NF028169.2
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005632812.1
COORDINATES: similar to AA sequence:RefSeq:WP_009678589.1
COORDINATES: protein motif:HMM:TIGR03618.1
PPOX class F420-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012656.2
COORDINATES: protein motif:HMM:NF024844.2
MaoC/PaaZ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010123488.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020549732.1
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF013920.2
Zn-ribbon domain-containing OB-fold protein
COORDINATES: similar to AA sequence:RefSeq:WP_017946111.1
class I adenylate-forming enzyme family protein
COORDINATES: protein motif:HMM:NF037170.2
COORDINATES: similar to AA sequence:RefSeq:WP_010995892.1
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010039486.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015035434.1
COORDINATES: protein motif:HMM:NF012596.2
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020122240.1
COORDINATES: similar to AA sequence:RefSeq:WP_007299571.1
COORDINATES: similar to AA sequence:RefSeq:WP_006680475.1
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: similar to AA sequence:RefSeq:WP_010596691.1
COORDINATES: similar to AA sequence:RefSeq:WP_017682289.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885115.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885113.1
COORDINATES: protein motif:HMM:NF040049.1
COORDINATES: protein motif:HMM:NF025200.2
COORDINATES: similar to AA sequence:RefSeq:WP_006553202.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553203.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010596715.1
COORDINATES: similar to AA sequence:RefSeq:WP_008720283.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006553212.1
COORDINATES: similar to AA sequence:RefSeq:WP_017681377.1
TraM recognition domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017681378.1
COORDINATES: similar to AA sequence:RefSeq:WP_017681379.1
COORDINATES: similar to AA sequence:RefSeq:WP_010596721.1
COORDINATES: similar to AA sequence:RefSeq:WP_010596722.1
COORDINATES: similar to AA sequence:RefSeq:WP_013798114.1
COORDINATES: similar to AA sequence:RefSeq:WP_017681383.1
COORDINATES: similar to AA sequence:RefSeq:WP_006934618.1
COORDINATES: similar to AA sequence:RefSeq:WP_006553221.1
COORDINATES: similar to AA sequence:RefSeq:WP_016885092.1
COORDINATES: similar to AA sequence:RefSeq:WP_009475966.1
COORDINATES: similar to AA sequence:RefSeq:WP_006934611.1
COORDINATES: similar to AA sequence:RefSeq:WP_013414868.1