Prescottella equi strain DSSKP-R-001 plasmid plas1, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Prescottella.
Full genome sequence of Rhodococcus sp. DSSKP-R-001
Submitted (13-MAR-2018) College of Life Sciences, Northeast Normal University, No. 5268, People's Street, Changchun 130024, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP027794.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SOAPdenovo v. December-2016\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 163.3x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 19:14:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,201\nCDSs (total) :: 5,121\nGenes (coding) :: 5,089\nCDSs (with protein) :: 5,089\nGenes (RNA) :: 80\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 3\nPseudo Genes (total) :: 32\nCDSs (without protein) :: 32\nPseudo Genes (ambiguous residues) :: 0 of 32\nPseudo Genes (frameshifted) :: 9 of 32\nPseudo Genes (incomplete) :: 27 of 32\nPseudo Genes (internal stop) :: 3 of 32\nPseudo Genes (multiple problems) :: 6 of 32\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018135435.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
PBSX family phage terminase large subunit
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010595308.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_005083852.1
COORDINATES: similar to AA sequence:RefSeq:WP_016027842.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017658133.1
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014520.2
COORDINATES: protein motif:HMM:NF013654.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF019842.2
COORDINATES: similar to AA sequence:RefSeq:WP_016032732.1
COORDINATES: similar to AA sequence:RefSeq:WP_019735297.1
RusA family crossover junction endodeoxyribonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_007632269.1
COORDINATES: similar to AA sequence:RefSeq:WP_003097984.1
COORDINATES: similar to AA sequence:RefSeq:WP_015890191.1
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
class 1b ribonucleoside-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:NF014124.2
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_015297934.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005202391.1
COORDINATES: protein motif:HMM:NF012372.2
COORDINATES: protein motif:HMM:NF018926.2
COORDINATES: similar to AA sequence:RefSeq:WP_016046466.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF024139.2
COORDINATES: protein motif:HMM:NF022432.2
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF025107.2
COORDINATES: similar to AA sequence:RefSeq:WP_011210436.1
COORDINATES: similar to AA sequence:RefSeq:WP_020142279.1
COORDINATES: similar to AA sequence:RefSeq:WP_014983590.1
COORDINATES: protein motif:HMM:NF022364.2
COORDINATES: similar to AA sequence:RefSeq:WP_016027884.1
COORDINATES: similar to AA sequence:RefSeq:WP_007827572.1
P22 phage major capsid protein family protein
COORDINATES: protein motif:HMM:NF017919.2