Ostreococcus lucimarinus CCE9901 chromosome 16, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000596.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Heat Shock Protein 90, endoplasmic reticulum
molecular chaperone, HSP90 family; endoplasmin; contains an ER-targetting peptide and a KDEL retention signal
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase, possibly anchored on lumen-side of thylakoid membrane (non-cleavable TAT signal)
MOP(MATE) family transporter: multidrug efflux
FKBP-type peptidyl-prolyl isomerase, cytosolic; based on sequence, should not bind rapamycin, similar to orthologue in Arabidopsis but not in Chlamydomonas
CytB family transporter: NADPH oxidase-like protein
PPR protein, possibly chloroplast-located
putative psaK, PSI-K, subunit X, photosystem I polypeptide
22-kDa heat-shock protein; probably cyotsolic; molecular chaperone involved in prevention of protein aggregation; acts as a dimer
Ribosomal protein L36a, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L36a; Cytosolic 60S large ribosomal subunit protein L36a
distinct from photosynthetic electron transfer catalyst, CYC6
soluble c-type cytochrome, chloroplast precursor, unknown function
Carbamoyl-phosphate synthase (glutamine-dependent) Small chain (EC 6.3.5.5) (CarA); first step in pyrimidine biosynthesis; probably chloroplast-localized
DMT family transporter: glucose-6-phosphate/phosphate
Ribosomal protein S4, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S4; Cytosolic 40S small ribosomal subunit protein S4
Cytosolic 80S ribosomal protein S2; Cytosolic 40S small ribosomal subunit protein S2
Ribosomal protein S2, component of cytosolic 80S ribosome and 40S small subunit || 40S Ribosomal protein S2
chloroplast Clp protease, subunit of ClpP peptidase complex
Clp protease, ClpP subcomplex, inactive subunit with structural role, chloroplast-targetted
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); cytosolic; similar to At2g38730 (AtCYP22)
FKBP-type peptidyl-prolyl isomerase, possibly targetted to thylakoid lumen (TAT pathway)
Ribosomal protein L30, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L30; Cytosolic 60S large ribosomal subunit protein L30
DMT family transporter: UDP-galactose/UDP-glucose
Heat Shock Protein 70, cytosolic; dnaK-type molecular chaperone; involved in protein folding and disaggregation
Putative mitochondrial ribosomal protein L15
Putative mitochondrial ribosomal protein L15, imported to mitochondria