Ostreococcus lucimarinus CCE9901 chromosome 15, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000595.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Ribosomal protein S27, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S27; Cytosolic 40S small ribosomal subunit protein S27
DMT family transporter: phosphate/phosphoenolpyruvate
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase, possibly anchored on lumen-side of thylakoid membrane (non-cleavable TAT signal)
Plastid ribosomal protein L4 large ribosomal subunit
Chloroplast ribosomal protein L4; Chloroplast large ribosomal subunit protein L4; imported to chloroplast
PRPL12; Chloroplast ribosomal protein L12; Chloroplast large ribosomal subunit protein L12
PRPL12; Chloroplast ribosomal protein L12
ferredoxin thioredoxin reductase beta chain
prasinophyte light harvesting complex, chlorophyll binding
Ribosomal protein L23, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L23; Cytosolic 60S large ribosomal subunit protein L23
psbW, PSII-W, photosystem II polypeptide
violaxanthin de-epoxidase, chloroplast precursor
violaxanthin de-epoxidase precursor, putative precursor of plastid localized enzyme
zeaxanthin epoxidase, chloroplast precursor
Plastid ribosomal protein S6 small ribosomal subunit
Chloroplast ribosomal protein S6; Chloroplast small ribosomal subunit protein S6; imported to chloroplast
ABC(ATP-binding) family transporter (Uup-like protein/duplicated ATPase)
chloroplast cytochrome c biogenesis protein, Ccs1-like protein
psbQ, PSII-Q, OEE3, photosystem II polypeptide, oxygen evolving enhancer 3
Ribosomal protein L21, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L21; Cytosolic 60S large ribosomal subunit protein L21
co-chaperonin 10, precursor of mitochondrial protein(Rubisco-binding protein); co-chaperonin/groES family; combines with CPN60C to chaperone protein folding
Ribosomal protein S21, component of cytosolic 80S ribosome and 40S small subunit
Has EST support. CTZ69_B07.x1d_t, sort of, see model notes
Cytosolic 80S ribosomal protein S21; Cytosolic 40S small ribosomal subunit protein S21
Cytolic 80S ribosomal protein P1; Cytosolic 60S large ribosomal subunit protein P1
Acidic ribosomal protein P1, component of cytosolic 80S ribosome and 60S large subunit
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, putative chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (CDPMEK) (ISPE)
shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OE23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At4g15510; targeted to thylakoid lumen by TAT pathway || similar to psbP, possible thylakoid membrane protein
RND family transporter: Niemann-Pick type C1 disease protein-like protein
P-ATPase family transporter: calcium ion
CPA1 family transporter: sodium ion/proton