Ostreococcus lucimarinus CCE9901 chromosome 9, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000589.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
ABC(ATP-binding) family transporter: iron compound
DMT family transporter: CMP-sialic acid/UDP-N-acetylglucosamine
F-ATPase family transporter: protons (mitochondrial)
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); C-terminal domain of unknown function; no clear ortholog in Viridiplantae, but distantly related to CM271C in Cyanidioschyzon; location ?
mitochondrial translation initiation factor 2
BASS family transporter: sodium ion/bile acid
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, putative chloroplast precursor (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) (ISPG)
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); cytosolic; similar to At4g38740 (ROC1, AtCYP18-3) and At2g21130 (AtCYP19-2)
Required for translation of chloroplast psaB mRNA; conserved in Chlamydomonas, higher plants and cyanobacteria
ArsAB family transporter: arsenite (ArsA)
F-ATPase family transporter: protons (vacuolar)
P-ATPase family transporter: calcium ion
DMT family transporter: phosphate/phosphoenolpyruvate
chloroplast Clp protease, subunit of ClpP peptidase complex
Clp protease, ClpP subcomplex, inactive subunit with structural role, chloroplast-targetted
Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S9; Cytosolic 40S small ribosomal subunit protein S9
MFS family transporter: glycerol-3-phosphate
Ribosomal protein L18, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L18; Cytosolic 60S large ribosomal subunit protein L18
Ribosomal protein S7, component of cytosolic 80S ribosome and 40S small subunit
but tauri ESTs semi-support the suggested splicing changes
Cytosolic 80S ribosomal protein S7; Cytosolic 40S small ribosomal subunit protein S7
ABC(ATP-binding) family transporter (Uup-like protein/duplicated ATPase)
MOP(MATE) family transporter: multidrug efflux
VIC family transporter: sodium/calcium ion channel
ClC family transporter: chloride ion channel
Ribosomal protein L6, component of cytosolic 80S ribosome and 60S large subunit
Has EST support. CTZ79_B03.y1d_s and CTZ79_B03.x1d_t
Cytosolic 80S ribosomal protein L6; Cytosolic 60S large ribosomal subunit protein L6
Oxa1 family transporter: inner membrane ALBINO3 chloroplast
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase, probably targetted to chloroplast stroma; closest relatives in bacteria
chlorophyll a/b binding, possibly photosystem I light harvesting complex