Ostreococcus lucimarinus CCE9901 chromosome 8, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000588.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
ABC(membrane) family transporter (Fe-S assembly/SufBCD system)
MIT family transporter: magnesium/cobalt ion
Ribosomal protein S30, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S30; Cytosolic 40S small ribosomal subunit protein S30
isopentenyl diphosphate synthase, putative chloroplast precursor; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (ISPH) (LYTB)
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); C-terminal domain of unknown function; no clear ortholog in Viridiplantae, but related to bacterial cyclophilins (horizontal gene tranfer ?); cytosolic
RND family transporter: Dispatched segment polarity protein (cholesterol release)
Ribosomal protein S29, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S29; Cytosolic 40S small ribosomal subunit protein S29
Ribosomal protein L40, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L40; Cytosolic 60S large ribosomal subunit protein L40
Plastid ribosomal protein L1 large ribosomal subunit
Has EST support. CTZ39_E08.y1d_s, see notes for how this impacts model; imported to chloroplast
Chloroplast ribosomal protein L1; Chloroplast large ribosomal subunit protein L1; imported to chloroplast
Plastid ribosomal protein L31 large ribosomal subunit
Chloroplast ribosomal protein L31; Chloroplast large ribosomal subunit protein L31; imported to chloroplast
ABC(ATP-binding) family transporter: toluene tolerance
nucleotide release factor, co-chaperone of HSP70B, chloroplast-targeted
Carbamoyl-phosphate synthase (glutamine-dependent) Large chain (EC 6.3.5.5) (CarB); first step in pyrimidine biosynthesis; probably chloroplast-localized
MC family transporter: Grave's disease carrier protein (GDC)-like protein
Tetratricopeptide-repeat containing protein, possible homologue of MBB1 involved in stabilization of psbB mRNA
IISP family transporter: preprotein translocase SecY subunit
Ribosomal protein L35a, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L35a; Cytosolic 60S large ribosomal subunit protein L35a
possible psbZ, PSII-Z, photosystem II polypeptide
MPT family transporter: inner membrane translocase (import) Tim8
Has EST support; related to Lci (low CO2 inducible) proteins of Chlamydomonas
related to Lci (low CO2 inducible) proteins of Chlamydomonas
F-ATPase family transporter: protons (vacuolar)
CPA1 family transporter: sodium ion/proton
putative delta carbonic anhydrase (cobalt/zinc)
Ribosomal protein L23a, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L23a; Cytosolic 60S large ribosomal subunit protein L23a