Ostreococcus lucimarinus CCE9901 chromosome 7, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000587.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Ribosomal protein S5, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S5; Cytosolic 40S small ribosomal subunit protein S5
ABC(ABCG) family transporter: pleiotropic drug
Ribosomal protein L18a, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L18a; Cytosolic 60S large ribosomal subunit protein L18a
FBT family transporter: folate/pteridine
MC family transporter: aspartate/glutamate (Ca2+-activated)
Ribosomal protein S27a, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S27a; Cytosolic 40S small ribosomal subunit protein S27a
Violaxanthin de-epoxidase related, chloroplast
related to violaxanthin de-epoxidase (NPQ1); othologous to At2g21860; probably chloroplast-targetted; may play a role in Energization-dependent Non-Photochemical Quenching (NPQ) PMID: 16143839
F-ATPase family transporter: protons (chloroplast)
MOP(MATE) family transporter: multidrug efflux
copper/zinc superoxide dismutase-like protein
copper, zinc superoxide dismutase activity
Plastid ribosomal protein L27 large ribosomal subunit
Chloroplast ribosomal protein L27; Chloroplast large ribosomal subunit protein L27; imported to chloroplast
ABC(ABCC) family transporter: multispecific organic anion/multidrug (ABCC)
DMT family transporter: UDP-galactose/UDP-glucose
HAAAP family transporter: tyrosine/tryptophan
F-ATPase family transporter: protons (vacuolar)
F-ATPase family transporter: protons (mitochondrial)
ClpC, chloroplast-targetted molecular chaperone, involved in protein import and folding and in ATP-dependent proteolysis
chaperonin 60 beta chain, precursor of chloroplast protein (Hsp60)(Rubisco-binding protein); chaperonin/groEL superfamily
precursor of chloroplast-localized protein, similar to PSBP (oxygen-evolving enhancer protein 2, 23 kDa subunit of oxygen evolving complex of photosystem II, OEC 23 kDa subunit, 23 kDa thylakoid membrane protein, OEC23); orthologous to At3g55330; directed to thylakoid lumen by a TAT signal
prasinophyte light harvesting complex, chlorophyll binding
ABC(membrane) family transporter (Fe-S assembly/SufBCD system)
ABC(ABCB) family transporter: multidrug (P-glycoprotein-like protein) (ABCB)
cox 11/CtaG family of cytochrome oxidase assembly protein-like protein
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); contains an additional nuclear movement/co-chaperone p23 domain (pfam03593.9), like Chlamydomonas orthologue; possibly directed to an organelle
DMT family transporter: phosphate/phosphoenolpyruvate
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) (ISPD)
P-ATPase family transporter: copper ion; heavy metal transporting P-type ATPase-like protein
MC family transporter: succinate/fumarate
Ribosomal protein L37, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L37; Cytosolic 60S large ribosomal subunit protein L37
MC family transporter: uncoupling protein
SulP family transporter: sulfate; sulfate transporter of the Major Facilitator Superfamily (MFS)
sulfate transporter, MFS (Major facilitator Superfamily) type; contains a C-terminal STAS domain; localization unsure because model is truncated; higher plant homologue reported to be chloroplast-located (J. Exp. Bot. 50, 1713-1714 (1999)), but prediction programs suggest plasma membrane
IISP family transporter: SRP receptor alpha-chain-like protein FtsY
signal recognition particle (sensu Eukaryota)
SRP-dependent cotranslational protein-membrane targeting
Tic110 family transporter: chloroplast inner envelope protein Tic110
ABC(binding protein) family transporter: iron compound
Plastid ribosomal protein L18 large ribosomal subunit
Chloroplast ribosomal protein L18; Chloroplast large ribosomal subunit protein L18; imported to chloroplast
ClpYQ (HslUV)-type protease, proteolytic subunit HSLV (ClpQ)
ClpYQ (HslUV)-type protease, proteolytic subunit HslV (ClpQ) (threonine peptidase)
PPR protein, possibly chloroplast-located