Ostreococcus lucimarinus CCE9901 chromosome 6, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000586.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
ABC(binding protein) family transporter: phosphate
MFS family transporter: multidrug efflux
putrescine aminopropyltransferase; S-adenosylmethionine-dependent methyltransferase; uses decarboxylated AdoMet to synthesize spermidine from putrescine, and spermine from spermidine
Heat Shock Protein 70, cytosolic; dnaK-type molecular chaperone; involved in protein folding and disaggregation; lid domain is truncated; contains a TRP domain at N-terminus, possibly involved in interaction with other chaperones like HSP90
Plastid ribosomal protein L13 large ribosomal subunit
Chloroplast ribosomal protein L13; Chloroplast large ribosomal subunit protein L13; imported to chloroplast
Ribosomal protein S12, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S12; Cytosolic 40S small ribosomal subunit protein S12
Oxa1 family transporter: 60 KD inner membrane protein OxaA-like protein
Ribosomal protein S11, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S11; Cytosolic 40S small ribosomal subunit protein S11
Plastid ribosomal protein S17 small ribosomal subunit
Chloroplast ribosomal protein S17; Chloroplast small ribosomal subunit protein S17; imported to chloroplast
Ribosomal protein S23, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S23; Cytosolic 40S small ribosomal subunit protein S23
VIC family transporter: calcium ion channel
NSCC2 family transporter: translocation proteinSec62
Ribosomal protein L17, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L17; Cytosolic 60S large ribosomal subunit protein L17
Tat family transporter: protein export (chloroplast membrane protein HCF106C)
Ribosomal protein L14, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L14; Cytosolic 60S large ribosomal subunit protein L14
P-ATPase family transporter: phospholipid
BASS family transporter: sodium ion/bile acid
Ribosomal protein L7a, component of cytosolic 80S ribosome and 60S large subunit
Has EST support. CTZ93_E05.x1d_t and CTZ14_C06.y1d_s
Cytosolic 80S ribosomal protein L7a; Cytosolic 60S large ribosomal subunit protein L7a
NCS1 family transporter: cytosine/purines/uracil/thiamine/allantoin
VIC family transporter: calcium-activated outward-rectifying potassium ion channel
putative psbS, photosystem II chlorophyll binding protein