Ostreococcus lucimarinus CCE9901 chromosome 5, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000585.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: Transposon sequencing failed to verify the number\nof repeat copies 577010-578630.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Ribosomal protein L27, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L27; Cytosolic 60S large ribosomal subunit protein L27
Tetratricopeptide-repeat containing protein, possible homologue of MBB1 involved in stabilization of psbB mRNA
CaCA family transporter: sodium ion/potassium ion/calcium ion
psaG, PSI-G, subunit V, photosystem I polypeptide
MOP(MATE) family transporter: multidrug efflux
Oxa1 family transporter: 60 KD inner membrane protein OxaA-like protein
VIC family transporter: potassium ion channel subfamily H
Ribosomal protein L35, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L35; Cytosolic 60S large ribosomal subunit protein L35
DMT family transporter: glucose-6-phosphate/phosphate
fucoxanthin chlorophyll a/c binding protein-like protein
chloroplast Clp protease, subunit of ClpP peptidase complex
Clp protease, ClpP subcomplex, catalytic subunit, chloroplast-targetted
F-ATPase family transporter: protons (mitochondrial)
MscS family transporter: small-conductance mechanosensitive ion channel
MPT family transporter: inner membrane translocase (import) Tim22
peroxisomal targeting signal 1 receptor Pex5; binds the PTS1 targetting signal SKL-COOH between its two TRP domains; PMID: 9789089
Plastid ribosomal protein S15 small ribosomal subunit
Chloroplast ribosomal protein S15; Chloroplast small ribosomal subunit protein S15; imported to chloroplast
P-ATPase family transporter: copper ion; heavy metal translocating P-type ATPase-like protein
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
chlorophyll a/b binding, possibly photosystem I light harvesting complex
Ribosomal protein S16, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S16; Cytosolic 40S small ribosomal subunit protein S16
MFS family transporter: multidrug efflux
F-ATPase family transporter: protons (vacuolar)
Heat Shock Protein 70, lumen of endoplasmic reticulum; dnaK-type molecular chaperone; involved in protein folding and disaggregation; unknown C-terminal domain after the lid domain
psbR, PSII-R, photosystem II polypeptide
ClpB molecular chaperone, probably chloroplast-targetted; involved in protection against heat shock
DMT family transporter: UDP-glucuronic acid/UDP-N-acetylgalactosamine
DMT family transporter: UDP-galactose/UDP-glucose
Translation elongation factor, mitochondrial
Ribosomal protein L13, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L13; Cytosolic 60S large ribosomal subunit protein L13