Ostreococcus lucimarinus CCE9901 chromosome 4, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000584.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: Transposon sequencing failed to verify\n776184-842853. False join at 776184 and 842853.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
MscS family transporter: small-conductance mechanosensitive ion channel
ABC(ABCG) family transporter: White protein-like protein (ABCG)
MOP(MATE) family transporter: multidrug efflux
Tetratricopeptide-repeat containing protein
Ribosomal protein S3, component of cytosolic 80S ribosome and 40S small subunit
Has EST support. present: 1 CTZ23_F04.x1d_t, but this EST doesn't splice out the first intron || present: 1
Cytosolic 80S Ribosomal Protein S3; Cytosolic 40S Small Ribosomal Subunit Protein S3 || 40S Ribosomal protein S3
mitochondrial GrpE homolog, nucleotide release factor, co-chaperone of HSP70B, mitochondrion-targeted
MFS family transporter: glycerol-3-phosphate
Ribosomal protein L9, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L9; Cytosolic 60S large ribosomal subunit protein L9
psaF, PSI-F, subunit III, photosystem I polypeptide
possible early light induced protein or carotenoid biosynthesis related, also has beta-Ig-H3/fasciclin domain
hypothetical protein, contains no bromo domain
Ribosomal protein L8, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L8; Cytosolic 60S large ribosomal subunit protein L8
SSS family transporter: sodium ion/solute
DASS family transporter: 2-oxoglutarate/malate
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase; probably targetted to chloroplast, but lacks a thylakoid translocation signal in contrast to Arabidopsis and Chlamydomonas orthologues
F-ATPase family transporter: protons (vacuolar)
IISP family transporter: preprotein translocase SecY subunit
VIC family transporter: calcium ion channel
Ribosomal protein L10a, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L10a; Cytosolic 60S large ribosomal subunit protein L10a
AE family transporter: chloride/bicarbonate anion exchange
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase)
ABC(ABCG) family transporter: multidrug (ABCG)
FKBP-type peptidyl-prolyl isomerase, probably cytosolic; close to CrFBP16-7 and bacterial slpA rotamase
DMT family transporter: phosphate/phosphoenolpyruvate
Ctr2 family transporter: copper ion; CTR-type copper transporter
Pyridoxal-dependent decarboxylase acting on ornithine to produce putrescine; first step in polyamine biosynthesis. The proteins contain a conserved lysine residue which is known, in mouse ODC, to be the site of attachment of the pyridoxal-phosphate group. The protein also contain a stretch of three consecutive glycine residues that has been proposed to be part of a substrate- binding region; The N-terminal 100 AA have no equivalent in other organisms
Heat Shock Protein 70, probably chloroplastic; dnaK-type molecular chaperone; involved in protein folding and disaggregation; lacks the C-terminal domain involved in peptide binding (replaced by short acidic region)
ClC family transporter: chloride ion channel
cytochrome b6f complex chain PetM, chloroplast precursor
Ribosomal protein L34, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L34; Cytosolic 60S large ribosomal subunit protein L34
Putative mitochondrial ribosomal protein L28
Putative mitochondrial ribosomal protein L28, imported to mitochondria
CaCA family transporter: sodium ion/calcium ion
FKBP-type peptidyl-prolyl isomerase, probably targetted to chloroplast stroma
peptidyl-glycine alpha-amidating monooxygenase-like protein
Ribosomal protein S17, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S17; Cytosolic 40S small ribosomal subunit protein S17
Photosystem II D1 protein processing enzyme I (C-terminal processing protease),putative (ctpA); localized to thylakoid lumen (TAT pathway)