Ostreococcus lucimarinus CCE9901 chromosome 3, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000583.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: Small insert shatter libraries failed to verify\n528080-528270. False join at 528201.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
BASS family transporter: sodium ion/bile acid
Putative mitochondrial ribosomal protein S1
Putative mitochondrial ribosomal protein S1; similar to GenBank Accession Number Bacterial S1 proteins
BCCT family transporter: glycine betaine/carnitine/choline
ABC(ATP-binding) family transporter: cobalt ion
MOP(MATE) family transporter: multidrug efflux
DMT family transporter: phosphate/phosphoenolpyruvate
Putative mitochondrial ribosomal protein L18
Putative mitochondrial ribosomal protein L18, imported to mitochondria
MPT family transporter: inner membrane translocase (import) Tim10
MFS family transporter: sugar (sialic acid)
Ribosomal protein S20, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S20; Cytosolic 40S small ribosomal subunit protein S20
F-ATPase family transporter: protons (mitochondrial)
UMP synthase (orotate phosphoribosyltransferase / orotidine 5'-phosphate decarboxylase); bifunctional enzyme involved in Pyrimidine biosynthesis; possibly targetted to mitochondria
Plastid ribosomal protein S10 small ribosomal subunit
Chloroplast ribosomal protein S10; Chloroplast small ribosomal subunit protein S10; imported to chloroplast
Putative mitochondrial ribosomal protein L13
Putative mitochondrial ribosomal protein L13, imported to mitochondria
Ribosomal protein L7, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L7; Cytosolic 60S large ribosomal subunit protein L7
DMT family transporter: glucose-6-phosphate/phosphate
MPT family transporter: inner membrane translocase (import) Tim23
chloroplast translation initiation factor 2
Oxa1 family transporter: 60 KD inner membrane protein OxaA-like protein
MFS family transporter: sugar (galactose/glucose)
MC family transporter: carnitine/acylcarnitine
PPR protein, possibly chloroplast-located
F-ATPase family transporter: protons (vacuolar)
NCS1 family transporter: cytosine/purines/uracil/thiamine/allantoin
Ribosomal protein Sa, component of cytosolic 80S ribosome and 40S small subunit
Has EST support. CTZ84_G08.y1d_s and CTZ84_G08.x1d_t
Cytosolic 80S ribosomal protein Sa; Cytosolic 40S small ribosomal subunit protein Sa
Cytosolic 80S ribosomal protein L39; Cytosolic 60S large ribosomal protein L39
Ribosomal protein L39, component of cytosolic 80S ribosome and 60S large subunit
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase, possibly targetted to thylakoid lumen (TAT pathway); closest relatives in bacteria
FKBP-type peptidyl-prolyl isomerase, possibly targetted to thylakoid lumen (TAT pathway)
putative amino oxidase, possibly with a N-terminal SWIRM domain presumlably involved in protein/protein interactions
MPT family transporter: outer membrane translocase (import) Tom40
Ribosomal protein L10, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L10; Cytosolic 60S large ribosomal subunit protein L10
MC family transporter: aspartate/glutamate (Ca2+-activated)
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
Peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); cytosolic
Ribosomal protein L11, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L11; Cytosolic 60S large ribosomal subunit protein L11
prasinophyte light harvesting complex, chlorophyll binding
MPT family transporter: inner membrane translocase (import) Tim50
ABC(ATP-binding) family transporter (Fe-S assembly/SufBCD system)
P-ATPase family transporter: calcium ion
chlorophyll a/b binding, maybe photosystem I light harvesting complex
IISP family transporter: Translocation protein SEC63-like protein
Ribosomal protein L12, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L12; Cytosolic 60S large ribosomal subunit protein L12
MC family transporter: adenylate (Brittle-1 protein)
Peptide deformylase (PDF) (Polypeptide deformylase); [EC:3.5.1.88] (DEFM); deformylates methionine, the first step in post-translational maturation of organelle-encoded polypeptides; plant orthologue is targetted to both chloroplast and mitochondria
Plastid ribosomal protein S13 small ribosomal subunit
Chloroplast ribosomal protein S13; Chloroplast small ribosomal subunit protein S13; imported to chloroplast
ClC family transporter: chloride ion channel