Ostreococcus lucimarinus CCE9901 chromosome 2, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000582.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: Transposon sequencing failed to verify the number\nof repeat copies 562780-565486. False join at 563609.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
MC family transporter: carnitine/acylcarnitine
Plastid ribosomal protein S1, imported to chloroplast, small ribosomal subunit
Chloroplast ribosomal protein S1; Chloroplast small ribosomal subunit protein S1
transducin / WD-40 repeat protein, putative
similar to XP_467537.1| transducin / WD-40 repeat protein [Oryza sativa] 121 1e-25
Plastid ribosomal protein L9, imported to chloroplast, large ribosomal subunit
Chloroplast ribosomal protein L9; Chloroplast large ribosomal subunit protein L9
Plastid ribosomal protein L3, imported to chloroplast, large ribosomal subunit
Chloroplast ribosomal protein L3; Chloroplast large ribosomal subunit protein L3
MC family transporter: aspartate/glutamate (Ca2+-activated)
Ribosomal protein L15, component of cytosolic 80S ribosome and 60S large subunit
Cytosolic 80S ribosomal protein L15; Cytosolic 60S large ribosomal subunit protein L15
ABC(ABCD) family transporter: long-chain fatty acid
similar to XP_468503.1| putative splicing factor 3B subunit2 [Oryza sativa] 424 5e-117.
similar to GenBank Accession Number ABA96264.1| Dual specificity phosphatase, cata... [Oryza sativa] 162 1e-38.
Has EST support. much shorter than the plant homologs
similar to NP_567916.1| ubiquitin-protein ligase [Arabidopsis thaliana] 67.0
Putative mitochondrial ribosomal protein L24
Putative mitochondrial ribosomal protein L24, imported to mitochondria
Photosystem I reaction center subunit IV, probable
similar to Swiss-Prot Accession Number P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) 100 1e-20
septum formation protein MAF-like protein
similar to GenBank Accession Number EAN80372.1| septum formation protein MAF homologue, putative [Trypanosoma brucei] 100 1e-19
similar to GenBank Accession Number BAD33827.1| hypothetical protein [Oryza sativa] 55 9e-07
similar to Swiss-Prot Accession Number Q55393|DFA1_SYNY3 Diflavin flavoprotein A 1 (SsATF573) [Synechocystis sp.PCC 6803] 642 0.0
Has EST support.highly expressed; similar to XP_643831.1| hypothetical protein DDB0203089 54.3 1e-05
similar to XP_643831.1| hypothetical protein DDB0203089 54.3 1e-05
extrinsic (type 2) NADH dehydrogenase; NADH:quinone oxidoreductase; possibly mitochondrial
similar to YP_053688.1| membrane-associated lipoprotein [Mesoplasma florum] 306 5e-81
MC family transporter: uncoupling protein
Tetratricopeptide-repeat containing protein
Photosystem I light harvesting complex, chlorophyll a/b binding
BASS family transporter: sodium ion/bile acid
Ribosomal protein S14, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S14; Cytosolic 40S small ribosomal subunit protein S14
2-oxoglutarate dehydrogenase E2 subunit-like protein
similar to GenBank Accession Number CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit 394 3e-108.
similar to GenBank Accession Number AAT40862.1| DodoPi transposase 49.3 6e-04
Carotenoid dioxygenase plastidic fusion protein, putative
similar to YP_322564.1| Retinal pigment epithelial membrane protein [Anabaena variabilis] 290 1e-96.
inhibitor of striage chloroplast protein-like protein
Has EST support. the neighboring - and possibly co-regulation- with Glk is worth mentioning, and fits with a link of Isr with carbon catabolic repression
similar to GenBank Accession Number BAD46221.1| putative genetic modifier [Oryza sativa] 125 1e-27
inhibitor of striate chloroplast protein-like protein
Has EST support. all orthologs are from bacteria, with a few primitive eukaryotes having distant orthologs: Gardia,Trichomonas,Trypanozoma
similar to Swiss-Prot Accession Number P0A6V8|GLK_ECOLI Glucokinase (Glucose kinase) 169 1e-40
homogentisate phytylprenyltransferase/homogentisic acid geranylgeranyl transferase
similar to GenBank Accession Number AAP43913.1| homogentisic acid geranylgeranyl transferase [Oryza sativa] 213 1e-53.
similar to GenBank Accession Number AAR83877.1| 60S ribosomal protein L19 [Capsicum annuum] 259 3e-68
similar to XP_468259.1| putative DEAD box-like RNA helicase [Oryza sativa] 178 4e-43
similar to GenBank Accession Number CAA10103.1| ribosomal protein S28 [Prunus persica] 109 3e-23.
DNA excision repair protein ERCC-1-like protein
similar to Swiss-Prot Accession Number Q9MA98|ECC1_ARATH DNA excision repair protein ERCC-1 (AtERCC1) (AtRAD10) 77 3e-13
NA excision repair protein ERCC-1-like protein
Protein Lysyl hydroxylase fusion protein, putative
similar to Swiss-Prot Accession Number P24802|PLOD1_CHICK Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Gallus gallus] 58.9 5e-07; The Smyd domain may be a distant homologue of SET & MYND containing proteins, which are involved in methylation of Lysyl residues
similar to GenBank Accession Number BAD87855.1| putative beta-galactosidase [Oryza sativa] 707 0.0
similar to NP_194212.2| ABC1 family protein 189 2e-46
Has EST support. highly expressed protein
similar to XP_636768.1| hypothetical protein DDB0187892 [Dictyostelium discoideum] 53.5 2e-05
DNA replication complex GINS protein PSF2, putative
similar to Swiss-Prot Accession Number Q9C7A8|PSF2_ARATH Probable DNA replication complex GINS protein PSF2 69 7e-11
similar to Swiss-Prot Accession Number Q23457|RBX1_CAEEL RING-box protein 1 (Rbx1) (Ce-rbx-1) 124 8e-28.
vacuolar ATP synthase subunit D, probable
Magnesium-protoporyphyrin IX chelatase subunit chlI
similar to Swiss-Prot Accession Number P56304|CHLI_CHLVU Magnesium-chelatase subunit chlI 436 1e-120
chloroplast Clp protease, subunit of ClpP peptidase complex
Clp protease, ClpP subcomplex, catalytic subunit, chloroplast-targetted
Photosystem II reaction center W protein, chloroplast precursor
similar to PSBW_CHLRE Photosystem II reaction center W protein... 62.4 5e-09
similar to GenBank Accession Number AAX63898.1| geranylgeranyl reductase [Medicago truncatula] 643 0.0
circadian rhythm control Timeless-like protein
similar to NP_200103.1| ATIM (TIMELESS) [$Arabidopsis thaliana 65.1 8e-09
Glycerol-3-phosphate acyltransferase, probable
similar to Swiss-Prot Accession Number Q43307|PLSB_ARATH Glycerol-3-phosphate acyltransferase, chloroplast precursor (GPAT) [Arabidopsis thaliana] 248 4e-64
similar to GenBank Accession Number AAS52347.1| AEL337Cp [Ashbya gossypii] 38.1 0.13
similar to Swiss-Prot Accession Number Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, chloroplast precursor [Cucumis sativus] 194 2e-48
Has EST support. supported by ESTs CTZ89-H01 & CTZ82-F05; unique to Ostreococcus lucimarinus
similar to NP_326053.1| glycerol uptake facilitator protein [Mycoplasma pulmonis] 36.2 0.46.; unique to Ostreococcus lucimarinus
similar to YP_261493.1| hypothetical protein PFL_4401 [Pseudomonas fluorescence] 37.7 0.5
similar to GenBank Accession Number CAC40612.1| ERD2 protein 315 5e-85
Monogalactosyldiacylglycerol (MGDG) synthase
similar to GenBank Accession Number BAD33425.1| putative MGDG synthase type A [Oryza sativa] 375 2e-102
Conserved small cysteine-containing protein of unknown function
Has EST support. An orthologue of this gene is found in Sargasso sea clone aacy01143141
similar to Swiss-Prot Accession Number P49599|PP2C3_ARATH Protein phosphatase 2C PPH1 (PP2C) [Arabidopsis thaliana] 182 2e-44
similar to Swiss-Prot Accession Number P40032|YEN9_YEAST Hypothetical protein YER049W 244 8e-64
Prolyl (Lysyl) hydroxylase domain protein, putative Fe II 2-oxoglutarate-dependent dioxygenase; similar to Swiss-Prot Accession Number P40032|YEN9_YEAST Hypothetical protein YER049W 244 8e-64
similar to GenBank Accession Number AAT77079.1| putative Fip1 motif containing protein [Oryza sativa] 62 2e-08
Ubiquinone biosynthesis protein COQ4-like protein
similar to Swiss-Prot Accession Number Q9ZPR0|COQ4_ARATH Ubiquinone biosynthesis protein COQ4 homolog 144 2e-33
Has EST support. supported by EST CTZ80-B10, CTZ80-E11, CTZ80-B10; similar to NP_973635.2| unknown protein 62.8 6e-09
similar to NP_973635.2| unknown protein 62.8 6e-09.
similar to GenBank Accession Number ABA99383.1| hypothetical protein LOC_Os12g4183 [Oryza sativa] 181 4e-44
ribosome biogenesis protein RLP24, probable
similar to Swiss-Prot Accession Number O22165|RP24_ARATH Probable ribosome biogenesis protein RLP24 199 3e-50.
Ribosome biogenesis protein BOP1 (Block of proliferation 1 protein), probable
similar to Swiss-Prot Accession Number P97452|BOP1_MOUSE Ribosome biogenesis protein BOP1 (Block of proliferation 1 protein) 254 9e-66,cd00200, WD40, WD40 domain, found in a number of eukaryotic pr... 58.1 3e-09
similar to GenBank Accession Number AAZ24285.1| hypothetical protein CPS_0190 [Col... 35.8 0.45
glycosyl transferase, putative alpha-1,3-mannosyltransferase
similar to Swiss-Prot Accession Number Q9DBE8|ALG2_MOUSE Alpha-1,3-mannosyltransferase ALG2 (GDP-Man:Man(1)GlcNAc(2)-PP-dolichol mannosyltransferase) [Mus musculus] 278 4e-73
similar to GenBank Accession Number AAL33655.1| histone deacetylase [Zea mays] 548 1e-154.
Has EST support. Supported by EST CTZ75-E07. The distant (hypothetical) homologues in plants and animals are much bigger at the N-terminus
similar to XP_783665.1| PREDICTED: similar to CG8461-PA [Strongilocentrus purpuratus] 35.4 0.57
replication origin activator MCM3, probable
similar to GenBank Accession Number AAD48087.1| replication origin activator 3 [Zea mays] 524 4e-147.
thylakoid lumenal 30 kDa protein, probable
similar to Swiss-Prot Accession Number O49292|TL30_ARATH Thylakoid lumenal 29.8 kDa protein, chloroplast precursor 156 8e-37.
DNA-directed RNA polymerase I polypeptide 2
Histidinol-phosphate aminotransferase, chloroplast precursor, probable
Nucleic acid binding GTPase, translation factor, putative
Has EST support. supported by ESTs CTZ81-E01, CTZ79-E03
similar to NP_909887.1| putative GTP-binding protein [Oryza sativa] 409 1e-112.
similar to XP_467918.1| armadillo/beta-catenin repeat protein [Oryza sativa] 104 6e-21.
transcription & nuclear export THO-TREX component protein Tho2-like protein
Has EST support. Vertebrate and insect THO2 have an additional C-terminal domain which is missing in Ostreococcus and sea urchin THO2
similar to GenBank Accession Number CAD89219.3| Tho2 protein [Drosophila melanogaster] 301 7e-80
similar to COG3415, Transposase and inactivated derivatives 40.7 2e-04
similar to GenBank Accession Number AAO78684.1| hypothetical protein BT_3578 [Bacteroides thetaiotaomicron] 35.8 0.45; Ostreococci Orfan protein
similar to GenBank Accession Number A35566 IMP dehydrogenase (EC 1.1.1.205) I - human 498 3e-139
similar to Swiss-Prot Accession Number Q9Y7B6|PANB_EMENI 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate hydroxymethyltransferase) 243 9e-63
similar to Swiss-Prot Accession Number Q9Y678|COPG_HUMAN Coatomer gamma subunit (Gamma-coat protein) (Gamma-COP) 607 8e-172
Has EST support. supported by EST CTZ24-F05 & CTZ83-B02; Ostreococci orphan protein
similar to GenBank Accession Number AAS10916.1| lipoprotein, putative [Treponema denticola] 37.4 2.1; Ostreococci orphan protein
similar to GenBank Accession Number ABA24592.1| ABC transporter, transmembrane region [Anabaena variabilis] 40.0 0.17
RNA-binding protein, possibly exosome complex Ribosomal RNA processing protein
similar to COG1097, RRP4, RNA-binding protein Rrp4 and related proteins 38.0 7e-04; no ortholog in O.tauri
high affinity phosphate transporter, probable
similar to GenBank Accession Number AAO47330.1| high affinity phosphate transporter [Tetraselmis chui] 443 8e-123.
similar to GenBank Accession Number BAD87355.1| unknown protein [Oryza sativa] 34 1.3
similar to GenBank Accession Number BAD52880.1| lysine decarboxylase-like protein [Oryza sativa] 181 2e-44
Bromodomain transcription factor, putative
similar to GenBank Accession Number ABA98994.1| Bromodomain associated, putative [Oryza sativa] 40 0.074
similar to GenBank Accession Number AAD10649.1| Similar to Kin17 protein [Arabidopsis thaliana] 199 6e-50.
similar to Swiss-Prot Accession Number Q09882|PRP45_SCHPO Pre-mRNA splicing factor prp45 (Complexed with cdc5 protein 13) (Cell cycle control protein cwf13) 167 5e-40
no EST. The intron is anticipated from alignment with ArgS from O.tauri and other organisms. It is at a slighly different position compared to O.tauri
similar to GenBank Accession Number CAB11469.1| arginyl-tRNA synthetase [Arabidopsis thaliana] 479 1e-133
similar to Swiss-Prot Accession Number Q9C509|SGPL_ARATH Sphingosine-1-phosphate lyase (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) 404 3e-111
similar to Swiss-Prot Accession Number Q8LCQ3|SPT41_ARATH Transcription elongation factor SPT4 homolog 1 98 1e-19
conserved protein probably involved in Fe-S center assembly
similar to GenBank Accession Number AAG28474.1| putative histone deacetylase [Arabidopsis thaliana] 610 5e-173.
vacuolar type H+-ATPase proteolipid subunit
similar to GenBank Accession Number CAH58637.1| vacuolar H+-ATPase C subunit [Plantago major] 140 1e-32.
similar to NP_196741.2| KEA6; potassium:hydrogen antiporter [Arabidopsis thaliana] 377 6e-103
similar to NP_192770.2| isoleucine-tRNA ligase/ tRNA ligase [Arabidopsis thaliana] 1234 0.0
similar to XP_463803.1| putative hepatocellular carcinoma antigen 66 [Oryza sativa] 115 2e-24.
Has EST support. the homology is restricted to the C-terminus of the protein where the active domain is located
similar to Swiss-Prot Accession Number P18296|CUT1_SCHPO Separin (Separase) (Cell untimely torn protein 1) 165 2e-38
eukaryotic translation initiation factor 4E
Has EST support. This is a short protein compared to most plant EIF4E, except barley
similar to GenBank Accession Number AAP40633.1| photoperiod independent early flowering1 [Arabidopsis thaliana] 724 0.0.
MAK16-like nucleolar RNA binding protein, putative
similar to Swiss-Prot Accession Number Q6P7N1|RBM13_XENTR MAK16-like protein RBM13 (RNA binding motif protein 13-like) [Xenopus tropicalis] 207 2e-52
similar to Swiss-Prot Accession Number Q43154|GSHRP_SPIOL Glutathione reductase, chloroplast precursor 495 2e-138 || glutathione reductase
no ortholog in O. tauri, no other copy in the genome. No cognate EST
similar to XP_794660.1| PREDICTED: hypothetical protein XP_789567 [Strongylocentrotus purpuratus] 77 1e-12.
similar to Swiss-Prot Accession Number P53695|EXO1_SCHPO Exodeoxyribonuclease I 285 8e-15
chloroplast thylakoid protein kinase STN7, probable
similar to Swiss-Prot Accession Number Q9S713|STT7_ARATH Serine/threonine-protein kinase SNT7, chloroplast precursor (Stt7 homolog) 142 4e-32
similar to GenBank Accession Number AAX98188.1| polyketide synthase type I [Streptomyces aizunensis] 244 6e-62.
no cognate EST, no homologue in Ostreococcus tauri & in Sargasso sequences; unique to Ostreococcus lucimarinus
similar to XP_530400.1| PREDICTED: hypothetical protein XP_ 35.8 1.9; unique to Ostreococcus lucimarinus
snoRNA-binding nucleolar protein, putative
similar to NP_009551.2| Possible snoRNA-binding protein, based on computational analysis of large-scale protein-protein interaction data; Utp20p [Saccharomyces cerevisiae] 148 3e-33.
clathrin adaptor medium subunit, putative
similar to GenBank Accession Number AAU43995.1| putative clathrin [Oryza sativa] 362 1e-98
Conserved Green lineage protein of Unknown function
Luminal binding protein precursor, probable
similar to Swiss-Prot Accession Number Q03685|BIP5_TOBAC Luminal binding protein 5 precursor (BiP 5) 965 0.0.
an intact Caf1 gene is found about 60 Kb downstream on the same chromosome. This CafR copy is missing a proper N-terminus and is thus suggested to be a pseudogene; Pseudogene related to Caf1 ribonuclease
similar to NP_565735.1| ribonuclease/ transcriptional repressor [Arabidopsis thaliana] 237 2e-61; Pseudogene related to Caf1 ribonuclease
chromosome segregation HEC-related protein
similar to NP_075783.1| HEC protein [Mus musculus] 66.6 2e-09
similar to Swiss-Prot Accession Number Q9FMU5|WDR50_ARATH WD-repeat protein At5g14050 121 6e-26
Ddx49-related DEAD box helicase superfamily II protein
similar to GenBank Accession Number AAH47834.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 [Danio rero] 364 4e-99
similar to GenBank Accession Number AAL19122.1| aconitate hydratase 2 [Salmonella typhimurium] 1239 0.0
similar to GenBank Accession Number AAV59424.1| putative deoxyribonucleoside kinase [Oryza sativa] 213 4e-54.
Asparagine synthase (glutamine-hydrolyzing) related protein
asparagine synthase (glutamine-hydrolyzing) activity
similar to XP_751583.1| asparagine synthase related protein [Aspergillus fumigatus Af293] 227 8e-58.
similar to GenBank Accession Number CAA30068.1| legumin [Pisum sativum] 33.5 2.2; unique to Ostreococcus lucimarinus
similar to Swiss-Prot Accession Number P54069|BEM46_SCHPO Protein bem46 91 5e-17
Bem46-related conserved protein, putative alpha/beta hydrolase; similar to Swiss-Prot Accession Number P54069|BEM46_SCHPO Protein bem46 91 5e-17
XPA (DNA repair protein)-binding GTPase-like protein
similar to Swiss-Prot Accession Number Q9HCN4|XAB1_HUMAN XPA-binding protein 1 258 2e-67
Has EST support. The hits all refers to the C-terminal half of the protein. The N-terminal half is unique with no homology to anything else. There are many AAA ATPases in Ostreococcus. This one has no ortholog in O.tauri.
similar to Swiss-Prot Accession Number O13764|PEX6_SCHPO Peroxisomal biogenesis factor 6 (Peroxin-6) 190 2e-46.
Clp protease, ClpP subcomplex, inactive subunit with structural role, chloroplast-targeted
1-deoxy-D-xylulose-5-phosphate synthase plastid precursor
Has EST support. almost complete coverage
similar to GenBank Accession Number AAD56390.2| 1-deoxy-D-xylulose-5-phosphate synthase [Artemisia annua] 939 0.0 || 1-deoxy-D-xylulose-5-phosphate synthase, putative chloroplast precursor (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS)
similar to NP_001031097.1| unknown protein [Arabidopsis thaliana] 97.8 1e-19
Sojo-related cytoskeleton protein, putative
similar to GenBank Accession Number AAM63867.1| 50S ribosomal protein L17 [Arabidopsis thaliana] 94.7 8e-19
Coatomer protein complex, subunit zeta 1
similar to GenBank Accession Number BAA93045.1| nonclathrin coat protein zeta2-COP [Zea mays] 134 1e-30
thylakoid lumenal 20 kDa protein, putative
similar to GenBank Accession Number BAD68170.1| thylakoid lumenal 20 kDa protein [Oryza sativa] 105 2e-21
Signal recognition particle 9 kDa protein, putative
similar to Swiss-Prot Accession Number Q9SMU7|SRP09_ARATH Signal recognition particle 9 kDa protein (SRP9) 36 0.46.
Splicing factor 5-related RNA binding protein
Has EST support. the animal homologs are longer and contain a SR domain besides the RRM one
similar to Swiss-Prot Accession Number Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 (RNA-binding protein srp-4) 42 0.008
ATP synthase beta chain, mitochondrial precursor
similar to Swiss-Prot Accession Number P38482|ATPBM_CHLRE ATP synthase beta chain, mitochondrial precursor [Chlamydomonas reinhardtii] 761 0.0
DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase C subunit 3)
similar to Swiss-Prot Accession Number Q9D483|RPC62_MOUSE DNA-directed RNA polymerase III 62 kDa polypeptide (RNA polymerase C subunit 3) (RPC3) (RNA polymerase III C62 subunit) 91 6e-17
Eukaryotic translation initiation factor 2, alpha subunit
similar to GenBank Accession Number AAM51263.1| putative eukaryotic translation initiation factor 2 alpha subunit eIF2 [Arabidopsis thaliana] 367 2e-100.
similar to GenBank Accession Number ABA20512.1| conserved hypothetical protein [Anabaena variabilis] 103 3e-21
transcription factor IIa large subunit 3, TFIIA3, putative
similar to GenBank Accession Number AAR28000.1| TFIIA-L3 [Arabidopsis thaliana] 74 2e-12
Glutamyl-tRNA(Gln) amidotransferase subunit A, probable
similar to NP_189194.1| amidase/ glutamyl-tRNA(Gln) amidotransferase [Arabidopsis thaliana] 390 1e-106
synaptotagmin, Ca2+-dependent lipid-binding protein, putative
similar to GenBank Accession Number BAC76813.1| synaptotagmin C [Arabidopsis thaliana] 147 2e-33
Phosphotyrosyl phosphate activator/protein phosphatase 2A regulatory subunit, putative
Eukaryotic translation initiation factor 3 subunit 8
similar to Swiss-Prot Accession Number O49160|IF38_ARATH Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) 1e-123
similar to NP_922034.1| putative transcription factor [Oryza sativa] 152 4e-36.
similar to GenBank Accession Number CAB95727.1| transcription factor E2F [Daucus carota] 120 4e-26.
Phosphatidic acid Phosphatase-related protein
similar to NP_567117.1| unknown protein [Arabidopsis thaliana] 160 2e-38
Clp protease, ClpP subcomplex, inactive subunit with structural role, chloroplast-targetted
biotin holocarboxylase synthetase-like protein
similar to GenBank Accession Number AAL93108.1| biotin holocarboxylase synthetase 1 197 3e-49
biotin holocarboxylase synthetase 1-like protein
Has EST support. Albeit highly similar to this protein, all homologues are longer on the C-terminus (800/900 aa vs 551.
similar to GenBank Accession Number CAB79301.1| beta adaptin-like protein [Arabidopsis thaliana] 607 5e-172
similar to NP_918582.1| putative tyrosyl-tRNA synthetase. [Oryza sativa] 445 2e-123
RPC10 subunit of RNA polymerases I, II, and III, probable
DNA-directed RNA polymerase II subunit 9, probable
similar to Swiss-Prot Accession Number P36958|RPB9_DROME DNA-directed RNA polymerase II 15.1 kDa polypeptide 113 2e-24
polyA tail-shortening ribonuclease, probable
similar to NP_565735.1| ribonuclease/ transcriptional repressor [Arabidopsis thaliana] 323 5e-87.
eukaryotic translation initiation factor 6
similar to Swiss-Prot Accession Number O55135|IF6_MOUSE Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) 336 4e-91
replication factor C subunit 5 (36kDa), probable
similar to XP_468050.1| putative replication factor C 36kDa subunit [Oryza sativa] 319 1e-85
DNA-directed RNA polymerase II subunit 3
similar to Swiss-Prot Accession Number Q39211|RPB3A_ARATH DNA-directed RNA polymerase II 36 kDa polypeptide A (RNA polymerase II subunit 3) 187 5e-46
Transcription initiation factor IIA gamma chain, probable
Has EST support. there are several copies of that gene in the O.tauri genome
Proteasome subunit alpha type 4-like protein
similar to Swiss-Prot Accession Number Q9LE92|PSA4_ORYSA Proteasome subunit alpha type 4 267 2e-70
proteasome core complex (sensu Eukaryota)
Heat Shock Protein 70, chloroplast-located; dnaK-type molecular chaperone; involved in protein folding and disaggregation
psbX, PSII-X, photosystem II polypeptide
MFS family transporter: hexose phosphate
similar to Swiss-Prot Accession Number Q9R1P4|PSA1_MOUSE Proteasome subunit alpha type 1 (Proteasome component C2) (Macropain subunit C2) 186 7e-46
ribosomal protein L35, chloroplast precursor
similar to Swiss-Prot Accession Number P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplast precursor 62.4 4e-09
similar to Swiss-Prot Accession Number Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A 69 7e-10
similar to Swiss-Prot Accession Number Q9UBS8|RNF14_HUMAN RING finger protein 14 (Androgen receptor-associated protein 54)(Triad2 protein) (HFB30) (HRIHFB2038) 197 7e-49
UreG-like nucleotide binding urease assembly protein
similar to GenBank Accession Number CAC85462.1| putative urease accessory protein D [Arabidopsis thaliana] 120 6e-26
Has EST support. Orthologue found on Ch7 in O.tauri
similar to XP_483821.1| unknown protein [Oryza sativa] 52 6e-06
Probable complex I intermediate-associated protein 30-like protein
similar to Swiss-Prot Accession Number Q9LQI7|CI30_ARATH Probable complex I intermediate-associated protein 30 98 6e-19
Probable complex I intermediate-associated protein 30
similar to NP_563963.1| oxidoreductase [Arabidopsis thaliana] 121 3e-26.
ClC family transporter: chloride ion channel
shows similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OE23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); orthologous to At3g05410; targeted to thylakoid lumen by TAT pathway, but absence of AXA cleavage site and conservation of transmembrane region with Chlamydomonas and Arabidopsis suggest that it is retained as a transmembrane anchor || similar to psbP, photosystem II polypeptide
PPP protein, possible homologue of MCA1 involved in petA mRNA stabilization, chloroplast-located
NhaA family transporter: sodium ion/proton
Peptide deformylase, mitochondrial precursor (PDF) (Polypeptide deformylase); [EC:3.5.1.88] (DEFM); deformylates methionine, the first step in post-translational maturation of mitochondria-encoded polypeptides
Ribosomal protein S26, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S26; Cytosolic 40S small ribosomal subunit protein S26
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase; contains 3 FKBP domains in tandem, followed by 3 TPR repeats
MFS family transporter: multidrug efflux
possible psaO, PSI-O, photosystem I polypeptide
DMT family transporter: phosphate/phosphoenolpyruvate DMT
Putative mitochondrial ribosomal protein L11
Putative mitochondrial ribosomal protein L11, imported to mitochondria
Plastid ribosomal protein L10, imported to chloroplast, large ribosomal subunit
Chloroplast ribosomal protein L10; Chloroplast large ribosomal subunit protein L10
Molybdopterin biosynthesis CNX3/MoaC precursor Z synthase subunit
similar to Swiss-Prot Accession Number Q39056|CNX3_ARATH Molybdopterin biosynthesis CNX3 protein 183 4e-45.
similar to NP_176103.2| helicase domain-containing protein [Arabidopsis thaliana] 382 e-104