Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus.
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation
Submitted (22-JUN-2017) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (21-FEB-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CP000581.\nURL -- http://www.jgi.doe.gov/ostreococcus\nJGI Project ID: 3436080\nSource DNA was provided by Brian Palenik (bpalenik@ucsd.edu))\nStock culture is available from CCMP (http://ccmp.bigelow.org/) as\nstrain number CCMP2514\nContacts: Brian Palenik (bpalenik@ucsd.edu))\n Igor Grigoriev (ivgrigoriev@lbl.gov)\nAnnotation done by JGI-PGF\nManual curation done by the Ostreococcus User Community\nFinishing done at Stanford/JGI, Stanford Human Genome Center\n(www-shgc.stanford.edu)\nThe finished chromosome has no gaps. The sequence has less than one\nerror in 100,000 bp.A\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376)\nAdditional Note: Transposon sequencing failed to verify the number\nof repeat copies 260140-261700. Small insert shatter libraries\nfailed to verify 1091415-1113771. False join at 1091460.\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: INSDC submitter\nAnnotation Status :: Full annotation\nAnnotation Pipeline :: Eukaryotic Annotation Propagation Pipeline\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
VIC family transporter: potassium ion channel
CPA1 family transporter: sodium ion/proton
Has EST support; may be chloroplastic or mitochondrial protein
molecular chaperone, HSP90 family; may be chloroplastic or mitochondrial protein
peptidyl-prolyl cis-trans isomerase, FKBP-type
FKBP-type peptidyl-prolyl isomerase, possibly targetted to thylakoid lumen (Sec pathway ?)
MC family transporter: carnitine/acylcarnitine
VIC family transporter: potassium ion channel subfamily B VIC
Ribosomal protein L3, component of cytosolic 80S ribosome and 60S large subunit
Has EST support. CTZ05_B11.y1d_s, except there is no splicing toward the 3' where this EST gaps
Cytosolic 80S ribosomal protein L3; Cytosolic 60S large ribosomal subunit protein L3
ABC(ABCB) family transporter: mitochondrial homolog (ABCB)
MOP(MATE) family transporter: multidrug efflux
ClpB molecular chaperone, probably cytosolic; involved in protection against heat shock; may lack the N-terminal domain
IISP family transporter: signal recognition particle protein (SRP54)
F-ATPase family transporter: protons (mitochondrial)
P-ATPase family transporter: sodium/potassium ion
Ribosomal protein S10, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S10; Cytosolic 40 large ribosomal subunit protein S10
VIC family transporter: calcium ion channel
Ornithine carbamoyltransferase (ARG3), involved in arginine biosynthesis; probably chloroplastic
MPT family transporter: inner membrane translocase (import) Tim17
FKBP-type peptidyl-prolyl isomerase, possibly targetted to thylakoid lumen (TAT pathway)
Tat family transporter: pH-dependent thylakoid protein export into thylakoid
mitochondrial Clp protease, subunit of ClpP peptidase complex
Clp protease, ClpP subcomplex, catalytic subunit, targetted to mitochondrion
Ribosomal protein S15a, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S15a; Cytosolic 40S small ribosomal subunit protein S15a
MC family transporter: peroxisomal membrane protein
F-ATPase family transporter: protons (vacuolar)
Ribosomal protein S13, component of cytosolic 80S ribosome and 40S small subunit
Cytosolic 80S ribosomal protein S13; Cytosolic 40S small ribosomal subunit protein S13
MC family transporter: aspartate/glutamate
CTP synthase, UTP--ammonia ligase; contains C-terminal glutamine amidotransferase (GLN) domain and N-terminal amidator (AMD) domain that ligates ammonia to phosphorylated UTP to form CTP; rate limiting step of cytosine biosynthesis
MC family transporter: uncoupling protein
Putative mitochondrial ribosomal protein L2
Putative mitochondrial ribosomal protein L2, imported to mitochondria
shows weak similarity to PSBP (OEE2, oxygen-evolving enhancer protein 2 of photosystem II, OE23, 23 kDa subunit of oxygen evolving complex : PMID: 3468511); may be orthologous to At5g11450; targeted to thylakoid lumen by TAT pathway || similar to psbP of Thermosynechococcus, photosystem II polypeptide
thioredoxin reductase, putative selenoenzyme
Plastid ribosomal protein L21 large ribosomal subunit
Chloroplast ribosomal protein L21; Chloroplast large ribosomal subunit protein L21; imported to chloroplast
ABC(ABCB) family transporter: multidrug (P-glycoprotein-like protein) (ABCB)
P-ATPase family transporter: calcium ion
MPT family transporter: inner membrane translocase (import) Tim22
AAA-metalloprotease FtsH, chloroplast precursor
membrane-anchored metalloprotease (M41 family) with a AAA domain; acts as a chaperone and a protease; involved on thylakoid biogenesis and PSII repair (PMID: 16126834)
prasinophyte light harvesting complex, chlorophyll binding protein
PPR protein, possibly chloroplast-located
ClpX molecular chaperone, HSP100, class 2; ATP-dependent subunit of ClpXP protease
Putative mitochondrial ribosomal protein S6
Putative mitochondrial ribosomal protein S6, imported to mitochondria
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type
putative peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin type (PMID: 15051864, 15047905); contains 4 N-terminal WD repeats, similar to GenBank Accession Number At3g44600 (AtCYP71)
MPT family transporter: inner membrane translocase (import) Tim13
Plastid ribosomal protein L17 large ribosomal subunit
Chloroplast ribosomal protein L17; Chloroplast large ribosomal subunit protein L17; imported to chloroplast
DMT family transporter: UDP-galactose/UDP-glucose
Rieske iron-sulfur protein of cytochrome b6f
Rieske iron-sulfur protein; cytochrome b6f complex iron-sulfur subunit, chloroplast precursor
DMT family transporter: phosphate/phosphoenolpyruvate
VIC family transporter: sodium ion channel