Novacetimonas hansenii strain C110 plasmid pKHC110_1, complete sequence.
type: Entry
definition: Novacetimonas hansenii strain C110 plasmid pKHC110_1, complete sequence.
sequence version: NZ_CP062149.1
sequence date: 2023-03-11
sequence: sequence
division: CON
label: NZ_CP062149.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16237465
keyword: RefSeq
source: Novacetimonas hansenii
organism: Novacetimonas hansenii
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Novacetimonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP062149.1.\nBacteria and source DNA available from Elena Liyaskina.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: hybridSPAdes v. 3.13.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 101.0x\nSequencing Technology :: Illumina; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/11/2023 03:16:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,145\nCDSs (total) :: 3,068\nGenes (coding) :: 3,013\nCDSs (with protein) :: 3,013\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 42 of 55\nPseudo Genes (internal stop) :: 12 of 55\nPseudo Genes (multiple problems) :: 15 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 6310
topology: circular
so has quality: SO_0000988
location: 1..6310
location: region:1-6310:1
RO_0002162: 436

NZ_CP062149
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16237465
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Komagataeibacter hansenii C110
author: Revin, V.
author: Liyaskina, E.
author: Mardanov, A.
author: Beletsky, A.
author: Ravin, N.
journal: Unpublished

2
title: Direct Submission
author: Revin, V.
author: Liyaskina, E.
author: Mardanov, A.
author: Beletsky, A.
author: Ravin, N.
journal: Submitted (24-SEP-2020) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6310:1
position: 6310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6310:1:source
so part of: sequence
organism: Novacetimonas hansenii
mol type: genomic DNA
strain: C110
isolation source: Tibicos symbiotic community
plasmid: pKHC110_1
country: Russia: Saransk

436
type: Taxonomy
SIO_000068: taxonomy

IFJ82_RS15595
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15595
old locus tag: IFJ82_15595
so part of: sequence
location: 801..1454
location: region:801-1454:1
so has part: feature:801-1454:1:exon
subclass of: SO_0000010

61368907
type: Gene
SIO_000068: ncbigene

position:801:1
position: 801
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1454:1
position: 1454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:801-1454:1:exon

IFJ82_RS15595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15595
old locus tag: IFJ82_15595
inference: COORDINATES: protein motif:HMM:NF014045.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: NYN domain-containing protein
translation: MTNVGVPPVVDGTIHTTTSAGIRIRIFVDFWNFTLGLKAQNSAFRADWSKIGPLFAQKACDRISPGSTAIYEAMHVYGSFDESKDAGLRNWFTNFLDKQAGVHVEVVPRQKKRNPPKCPSCHEPVSTCPECGSDMRGTEEKGVDTRIVTDMIKLAWANAYDAAILVTADRDFVPVAEFLQTKGIKVIHGAFPPGGSILSQKCWGHIDIPNFMSEFSR
SIO_010081: IFJ82_RS15595
subclass of: SO_0000673
so part of: IFJ82_RS15595
location: 801..1454
location: region:801-1454:1
so has part: feature:801-1454:1:exon

WP_192266645.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:801-1454:1:exon

IFJ82_RS15600
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15600
old locus tag: IFJ82_15600
so part of: sequence
location: 2198..2977
location: region:2198-2977:1
so has part: feature:2198-2977:1:exon
subclass of: SO_0000010

61368908
type: Gene
SIO_000068: ncbigene

position:2198:1
position: 2198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2977:1
position: 2977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2198-2977:1:exon

IFJ82_RS15600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15600
old locus tag: IFJ82_15600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009242021.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MNAKTAVSRKTYAVIPKHDPQVTMSNALVRAGHGLTLAEKRIVMLAVSKLDSRAPTPAPSSLVPRTKITAAEYAETFSVDARTAYEALQDAAKHLFDRKITFFEPAYTRAGKPLKPIRNDMRWVGRCKYHENEGWVELSWWPDLLPSLMGLKKQFTTYKLQQANALRSAYSWRLLELLMHYRDSGKAEYTIEDFCASMDATEKQKANFNNIKRRIIEPAVKELVEKDGWIIRWTPIKAGRKVSRLRFEFRKNPQPDLFP
SIO_010081: IFJ82_RS15600
subclass of: SO_0000673
so part of: IFJ82_RS15600
location: 2198..2977
location: region:2198-2977:1
so has part: feature:2198-2977:1:exon

WP_225578874.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2198-2977:1:exon

IFJ82_RS15605
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15605
old locus tag: IFJ82_15605
so part of: sequence
location: 3072..3443
location: region:3072-3443:1
so has part: feature:3072-3443:1:exon
subclass of: SO_0000010

61368909
type: Gene
SIO_000068: ncbigene

position:3072:1
position: 3072
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3443:1
position: 3443
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3072-3443:1:exon

IFJ82_RS15605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15605
old locus tag: IFJ82_15605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092408.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDDPKPWSIRGVHPEVRNAALAAAKREGVTIGEWLDRAIRSHVKSGRKQGENVSDNAVRPVADLSDAERLVSMISRLAEAGAPVPKSVASKAYNVIRDGLKDVQGSRKVESVAITDDRDAAS
SIO_010081: IFJ82_RS15605
subclass of: SO_0000673
so part of: IFJ82_RS15605
location: 3072..3443
location: region:3072-3443:1
so has part: feature:3072-3443:1:exon

WP_192266647.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3072-3443:1:exon

IFJ82_RS15610
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15610
old locus tag: IFJ82_15610
so part of: sequence
location: complement(3524..3955)
location: region:3524-3955:-1
so has part: feature:3524-3955:-1:exon
subclass of: SO_0000010

61368910
type: Gene
SIO_000068: ncbigene

position:3524:-1
position: 3524
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3955:-1
position: 3955
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3524-3955:-1:exon

IFJ82_RS15610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15610
old locus tag: IFJ82_15610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087596.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAAVVAGFGVSEIRTAHAQIIDPEWQATQAAIKADEQKQCRHMTLTRKFQCQEQLQETYKAKGLVPGTMPYVRRRFGGESVQGLDQEIRSINRTYSQARRLNGYEHPLPGELTADMQQGNVSYLSKLIEEKGGMPPLLPFGNR
SIO_010081: IFJ82_RS15610
subclass of: SO_0000673
so part of: IFJ82_RS15610
location: complement(3524..3955)
location: region:3524-3955:-1
so has part: feature:3524-3955:-1:exon

WP_225578872.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3524-3955:-1:exon

IFJ82_RS15615
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15615
old locus tag: IFJ82_15615
so part of: sequence
location: complement(3975..4826)
location: region:3975-4826:-1
so has part: feature:3975-4826:-1:exon
subclass of: SO_0000010

61368911
type: Gene
SIO_000068: ncbigene

position:3975:-1
position: 3975
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4826:-1
position: 4826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3975-4826:-1:exon

IFJ82_RS15615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15615
old locus tag: IFJ82_15615
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019086992.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNMTEDMRGSAKNMTVNMFKGALAVTIFALCSISVDAKAQVIVTDPKTEVSTDLGYLEAAKSYLQQGQQYYMQGEQYYEQLEQAAQEIQNAKGLANIASLGGGSLDSDISRLESVTDDLSDLYSLNGFSGNFSQEAREVLSSTYNLPGSTSAQAGAASLMGLASDSPTDAGYDRAARDTNQSMREAASLASVNEYRQASAQAMQRQDEALADLGDDDVGASTQLIAAEQSTALHQNDASLQLQQTSADMAFQQHIRQLEVENDIAEKNLKHLQKVQAFTASSD
SIO_010081: IFJ82_RS15615
subclass of: SO_0000673
so part of: IFJ82_RS15615
location: complement(3975..4826)
location: region:3975-4826:-1
so has part: feature:3975-4826:-1:exon

WP_225578873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3975-4826:-1:exon