Novacetimonas hansenii strain C110 plasmid pKHC110_2, complete sequence.
type: Entry
definition: Novacetimonas hansenii strain C110 plasmid pKHC110_2, complete sequence.
sequence version: NZ_CP062148.1
sequence date: 2023-03-11
sequence: sequence
division: CON
label: NZ_CP062148.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN16237465
keyword: RefSeq
source: Novacetimonas hansenii
organism: Novacetimonas hansenii
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Novacetimonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP062148.1.\nBacteria and source DNA available from Elena Liyaskina.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: hybridSPAdes v. 3.13.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 101.0x\nSequencing Technology :: Illumina; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/11/2023 03:16:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,145\nCDSs (total) :: 3,068\nGenes (coding) :: 3,013\nCDSs (with protein) :: 3,013\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 55\nCDSs (without protein) :: 55\nPseudo Genes (ambiguous residues) :: 0 of 55\nPseudo Genes (frameshifted) :: 19 of 55\nPseudo Genes (incomplete) :: 42 of 55\nPseudo Genes (internal stop) :: 12 of 55\nPseudo Genes (multiple problems) :: 15 of 55\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12258
topology: circular
so has quality: SO_0000988
location: 1..12258
location: region:1-12258:1
RO_0002162: 436

NZ_CP062148
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN16237465
type: BioSample
SIO_000068: biosample

1
title: Complete genome of Komagataeibacter hansenii C110
author: Revin, V.
author: Liyaskina, E.
author: Mardanov, A.
author: Beletsky, A.
author: Ravin, N.
journal: Unpublished

2
title: Direct Submission
author: Revin, V.
author: Liyaskina, E.
author: Mardanov, A.
author: Beletsky, A.
author: Ravin, N.
journal: Submitted (24-SEP-2020) Department of Molecular Biology of Microorganisms, Institute of Bioengineering, Research Center of Biotechnology of RAS, Prosp. 60-Let Oktyabrya, Bld 7-1, Moscow 117312, Russia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12258:1
position: 12258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12258:1:source
so part of: sequence
organism: Novacetimonas hansenii
mol type: genomic DNA
strain: C110
isolation source: Tibicos symbiotic community
plasmid: pKHC110_2
country: Russia: Saransk

436
type: Taxonomy
SIO_000068: taxonomy

IFJ82_RS15815
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15815
pseudo: true
so part of: sequence
location: complement(<2..535)
location: region:2-535:-1
so has part: feature:2-535:-1:exon
subclass of: SO_0000010

67832043
type: Gene
SIO_000068: ncbigene

position:2:-1
position: 2
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:535:-1
position: 535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-535:-1:exon

IFJ82_RS15815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15815
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015914434.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO process: GO:0006306 - DNA methylation [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA methyltransferase
SIO_010081: IFJ82_RS15815
subclass of: SO_0000673
so part of: IFJ82_RS15815
location: complement(<2..535)
location: region:2-535:-1
so has part: feature:2-535:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:2-535:-1:exon

IFJ82_RS15540
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15540
old locus tag: IFJ82_15540
so part of: sequence
location: 1927..2523
location: region:1927-2523:1
so has part: feature:1927-2523:1:exon
subclass of: SO_0000010

61368896
type: Gene
SIO_000068: ncbigene

position:1927:1
position: 1927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2523:1
position: 2523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1927-2523:1:exon

IFJ82_RS15540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15540
old locus tag: IFJ82_15540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003630653.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MGQRAVIYCRVSTADQSCARQKDELKRFSERAGYEVLDVFMETGSGVRVDRAERRKVMALAQAREIDAILVTELSRWGRSTIDLISTLQELESYRVSLIAMTGMMFDLATPHGRMLATVLAGIAEFERDLISERVKSGLAAAKARGKVLGRQKGERPKSDRLAPKVLALVAEKRSYRWIARDLGISKNTVAAIVQRER
SIO_010081: IFJ82_RS15540
subclass of: SO_0000673
so part of: IFJ82_RS15540
location: 1927..2523
location: region:1927-2523:1
so has part: feature:1927-2523:1:exon

WP_192266633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1927-2523:1:exon

IFJ82_RS15545
type: Gene
subclass of: SO_0000704
RO_0002162: 436
gene: parA
locus tag: IFJ82_RS15545
old locus tag: IFJ82_15545
so part of: sequence
location: 2702..3361
location: region:2702-3361:1
so has part: feature:2702-3361:1:exon
subclass of: SO_0000010

61368897
type: Gene
SIO_000068: ncbigene

position:2702:1
position: 2702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3361:1
position: 3361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2702-3361:1:exon

IFJ82_RS15545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
gene: parA
locus tag: IFJ82_RS15545
old locus tag: IFJ82_15545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019092486.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family partition ATPase
translation: MKTIAIISQKGGAGKTTLALHLATSASAAGYVSLILDTDPQATASSWKAWRGDVEPDVVDCAAHALLSRKLEQASELGAELSIIDTPPHADIMAREACRVADFLLIPCRPRAFDMDAVRTTAELVRASGKPAFVIFTAGPPRAPQVYKEAAEVVAQFGIPVAPVVLPERAVFHHSVGSGRTAQEAEPESKAAADIALLWNWVCDQVNMPSQKQNDTKTR
SIO_010081: IFJ82_RS15545
subclass of: SO_0000673
so part of: IFJ82_RS15545
location: 2702..3361
location: region:2702-3361:1
so has part: feature:2702-3361:1:exon

WP_192266635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2702-3361:1:exon

IFJ82_RS15550
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15550
old locus tag: IFJ82_15550
so part of: sequence
location: 3389..3646
location: region:3389-3646:1
so has part: feature:3389-3646:1:exon
subclass of: SO_0000010

61368898
type: Gene
SIO_000068: ncbigene

position:3389:1
position: 3389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3646:1
position: 3646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3389-3646:1:exon

IFJ82_RS15550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15550
old locus tag: IFJ82_15550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010505208.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRFAGLKKTVAPSVVESAVQTVVEKSRPRNPREGKRAVVGYFSPAVSKGLHQLALDTDTTIQGLIGEAIDDLMRKHGRHPFGER
SIO_010081: IFJ82_RS15550
subclass of: SO_0000673
so part of: IFJ82_RS15550
location: 3389..3646
location: region:3389-3646:1
so has part: feature:3389-3646:1:exon

WP_192266637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3389-3646:1:exon

IFJ82_RS15555
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15555
old locus tag: IFJ82_15555
so part of: sequence
location: complement(3686..4741)
location: region:3686-4741:-1
so has part: feature:3686-4741:-1:exon
subclass of: SO_0000010

61368899
type: Gene
SIO_000068: ncbigene

position:3686:-1
position: 3686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4741:-1
position: 4741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3686-4741:-1:exon

IFJ82_RS15555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15555
old locus tag: IFJ82_15555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010505209.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiator protein A
translation: MVSETPNLPVVHDALLPERHPQHDLFICDVADAVLKDVMPQMEHPFYSLSKKPETSVRRYEHNGQWLEITPSVKGLATIYDKDILIYCISQIMAKLKAGEKVSQRVRISSRDLLIFTNRGTAGKDYKALIEALDRLEGTRIRTNIVTGDEEQVDGFGLIDASSIRRKLGFDGRLLHCEIKLSDWVFNAIKSNDVLTLHRDYFRLRKPLERRVYELARKHCGQQAAWKASLEILLKKSGSQSPEKLFRQMIKNLAASDHLPDYRVEFDSQKDMVKFINRGTMKAAEPAVEAWMGALDPDIYGDARNIAPGWDVHHLEREWRMWLGDNEIAPKNPERHFIKFCETWFAKRGHP
SIO_010081: IFJ82_RS15555
subclass of: SO_0000673
so part of: IFJ82_RS15555
location: complement(3686..4741)
location: region:3686-4741:-1
so has part: feature:3686-4741:-1:exon

WP_192266639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3686-4741:-1:exon

IFJ82_RS15820
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15820
pseudo: true
so part of: sequence
location: <5107..>5199
location: region:5107-5199:1
so has part: feature:5107-5199:1:exon
subclass of: SO_0000010

67832044
type: Gene
SIO_000068: ncbigene

position:5107:1
position: 5107
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:5199:1
position: 5199
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5107-5199:1:exon

IFJ82_RS15820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15820
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019088713.1
note: incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: type II toxin-antitoxin system death-on-curing family toxin
SIO_010081: IFJ82_RS15820
subclass of: SO_0000673
so part of: IFJ82_RS15820
location: <5107..>5199
location: region:5107-5199:1
so has part: feature:5107-5199:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5107-5199:1:exon

IFJ82_RS15560
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15560
old locus tag: IFJ82_15560
so part of: sequence
location: complement(5224..5442)
location: region:5224-5442:-1
so has part: feature:5224-5442:-1:exon
subclass of: SO_0000010

61368900
type: Gene
SIO_000068: ncbigene

position:5224:-1
position: 5224
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5442:-1
position: 5442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5224-5442:-1:exon

IFJ82_RS15560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15560
old locus tag: IFJ82_15560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020048147.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MDMRRLVGKNFARLRQEKGLTQEQVEERSGFSQQYLSGLECGHRNPTVVTLYELAQALETTPVEFLKPVSLD
SIO_010081: IFJ82_RS15560
subclass of: SO_0000673
so part of: IFJ82_RS15560
location: complement(5224..5442)
location: region:5224-5442:-1
so has part: feature:5224-5442:-1:exon

WP_192266641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5224-5442:-1:exon

IFJ82_RS15565
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15565
old locus tag: IFJ82_15565
so part of: sequence
location: 5540..5740
location: region:5540-5740:1
so has part: feature:5540-5740:1:exon
subclass of: SO_0000010

61368901
type: Gene
SIO_000068: ncbigene

position:5540:1
position: 5540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5740:1
position: 5740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5540-5740:1:exon

IFJ82_RS15565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15565
old locus tag: IFJ82_15565
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPQPRQKAVNLNVKVTETTIRALSRTAALRDTTQKEVLMRALLKAGIEIDPHDLGEKRTLPWHERP
SIO_010081: IFJ82_RS15565
subclass of: SO_0000673
so part of: IFJ82_RS15565
location: 5540..5740
location: region:5540-5740:1
so has part: feature:5540-5740:1:exon

WP_048854890.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5540-5740:1:exon

IFJ82_RS15570
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15570
old locus tag: IFJ82_15570
so part of: sequence
location: 6192..7358
location: region:6192-7358:1
so has part: feature:6192-7358:1:exon
subclass of: SO_0000010

61368902
type: Gene
SIO_000068: ncbigene

position:6192:1
position: 6192
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7358:1
position: 7358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6192-7358:1:exon

IFJ82_RS15570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15570
old locus tag: IFJ82_15570
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQIPVHKTSVMQALQSAVARGYVWHVSGVVAAEKFLALEEKFTERYDTGLSRWQRCRQRRQGAAGVRFFAYPEQGTTRFLWWLLFTEGENTAFQQEHGRLKASDRKGRLCWGTEFELMQLPTPNGKVSWSWRMTRERVQAWQEEIQAAIRTTRDDNAIKAVMARLVRLPGFKGVRQQVFELHRFAKDDWGRIRRKAKSWGPPARPGYVRFRSDETVPAVRVVQRLLVGQTPFGKEPVGSERELPEEGAMPAVNENSQTGFPIPRGQDASRVLLIREAEQIRTFIAERWSYESIRLWLLDRYGEAFNIPLPAFRERVRRALQVKIAPVLKEVSRTTIQPTPIVEQAEEKKNEQPEKTQRLTWEERRAGRFPGSGTTVVHNSKPNRDELY
SIO_010081: IFJ82_RS15570
subclass of: SO_0000673
so part of: IFJ82_RS15570
location: 6192..7358
location: region:6192-7358:1
so has part: feature:6192-7358:1:exon

WP_192266625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6192-7358:1:exon

IFJ82_RS15575
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15575
old locus tag: IFJ82_15575
so part of: sequence
location: 7496..8323
location: region:7496-8323:1
so has part: feature:7496-8323:1:exon
subclass of: SO_0000010

61368903
type: Gene
SIO_000068: ncbigene

position:7496:1
position: 7496
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8323:1
position: 8323
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7496-8323:1:exon

IFJ82_RS15575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15575
old locus tag: IFJ82_15575
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIYLLPHLREACIVTESASGLLGASDAISVVRELTLQRITRLPEENQLGLHVAGVDRPLQINANRTISFGSGPRESVSVHDYIKRVMEIGDLIDVAVLPGQPYTLDSFWMNIVYEGNPSSFFVRKDDGLFAYRAKSGEKAERRVGRDLRDKAGHPFPDVMLQPPGPFIIRYGNKRQRKPDLRCPRCGLLFEVKKRNADWKYRVSHSAERPFASENAPSGWHAFVFPDYKINYLPNRAIAEAIDSGHARIEKDRYDSYAELDPYTVRPSPPPPCLG
SIO_010081: IFJ82_RS15575
subclass of: SO_0000673
so part of: IFJ82_RS15575
location: 7496..8323
location: region:7496-8323:1
so has part: feature:7496-8323:1:exon

WP_192266627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7496-8323:1:exon

IFJ82_RS15580
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15580
old locus tag: IFJ82_15580
so part of: sequence
location: 8434..10194
location: region:8434-10194:1
so has part: feature:8434-10194:1:exon
subclass of: SO_0000010

61368904
type: Gene
SIO_000068: ncbigene

position:8434:1
position: 8434
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10194:1
position: 10194
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8434-10194:1:exon

IFJ82_RS15580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15580
old locus tag: IFJ82_15580
inference: COORDINATES: protein motif:HMM:NF019348.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MAGGDNNAQAGFYKWLKAFLKDWGLQFSQSGFKNGDNIGNHAFDETTGYWQDIPYSGGKPPRWLFTIDLTDAAMPAALPLGLQETGIGGSNTAQADKAGLAVRILPMLQTAEGAFTPCPDLEVQALFMFHGALPAGSSSDSFGFNPSTGIMKRNSVPQTYIFAALLGLRSKGYTRHIEVEGSDCLITYGKVLDALQAAITVHPQGGQATPIPLYDLSDDGDLEKLKADLKDAWTTAGPLTGHTTTAAPGTVTDDDENDSGGPLDFSVLEVPENPDLLGIDPAVYRQINAMLQSGKQHLMLYGPPGTGKTSLARWIATSLPGGQWELITGSSDWSSQDIIGGYQPIGGGDIDFVPGVLLREFDHPLIIDELNRCDIDKVIGPLFTVLSGQQTTLPYRTDLTDKASQQYVILPHPKPGAAPHEFAPGEGWRLIATINSIDKASLYQLSYALSRRFGWVYVDAPRDLRDFVRAYLAKIDPTFVQQTADASCPLADLWAAINAVRVIGPAPIIDAIRAIRILDPNATFFGPANAPMRSAALDAFDMVLLPMLDGIVRPDAESIADAAVAAFGLAGEQAAQVRARLEAITI
SIO_010081: IFJ82_RS15580
subclass of: SO_0000673
so part of: IFJ82_RS15580
location: 8434..10194
location: region:8434-10194:1
so has part: feature:8434-10194:1:exon

WP_192266629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8434-10194:1:exon

IFJ82_RS15585
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15585
old locus tag: IFJ82_15585
so part of: sequence
location: 10194..11459
location: region:10194-11459:1
so has part: feature:10194-11459:1:exon
subclass of: SO_0000010

61368905
type: Gene
SIO_000068: ncbigene

position:11459:1
position: 11459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10194-11459:1:exon

IFJ82_RS15585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15585
old locus tag: IFJ82_15585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTIDAAIIDFSAALLLRYFKRGDTHESVAPRVEHQRDLDLLKAHWAISKPVRDLVGYLLTHPHETQSLLTMRTRVDDAVARGRIDARRTWLYRLQSGLPTAMIALEPVRSFNTGSNLLLAWVLREAATYTARLSGWQGPTSPYFEVIERAQGEMRAVQRLEALRDPLRAVTIGQRPRAGAVRSAARSRRQVYRLAVDAYTLLQGIEQGNPTAIDRVARSALIGPLEDWRRFELAVGLAVGEALASALNTPLQISLLGGNTAAPIVTAGRFSIYWQNRTPLYTAPELEPSEVLTRKILTAFNLSIGNDRPDLIVLDQMAEQVVAIVEVKYVAGDTSSGRFREAVDQVVRYARGYAPPGATGPILARSLVAISRDAPVIADLSADVLGSVDFAGIMRNELFAWAARLVGAPLPSPVLSEPLSA
SIO_010081: IFJ82_RS15585
subclass of: SO_0000673
so part of: IFJ82_RS15585
location: 10194..11459
location: region:10194-11459:1
so has part: feature:10194-11459:1:exon

WP_192266631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10194-11459:1:exon

IFJ82_RS15590
type: Gene
subclass of: SO_0000704
RO_0002162: 436
locus tag: IFJ82_RS15590
old locus tag: IFJ82_15590
pseudo: true
so part of: sequence
location: complement(11371..>12258)
location: region:11371-12258:-1
so has part: feature:11371-12258:-1:exon
subclass of: SO_0000010

61368906
type: Gene
SIO_000068: ncbigene

position:11371:-1
position: 11371
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12258:-1
position: 12258
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11371-12258:-1:exon

IFJ82_RS15590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 436
locus tag: IFJ82_RS15590
old locus tag: IFJ82_15590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001585276.1
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
SIO_010081: IFJ82_RS15590
subclass of: SO_0000673
so part of: IFJ82_RS15590
location: complement(11371..>12258)
location: region:11371-12258:-1
so has part: feature:11371-12258:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11371-12258:-1:exon