Hirundo rustica isolate bHirRus1 chromosome 38, bHirRus1.pri.v3, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
REFSEQ INFORMATION: The reference sequence is identical to\nCM037478.1.\nAssembly name: bHirRus1.pri.v3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/30. The original whole-genome shotgun project has the\naccession JADDRP000000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-AUG-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align v. DX 2.2.2.1; freebayes\n v. DX 19-07-11; gEVAL manual curation v.\n 2020-02-11; VGP assembly pipeline v. 1.6;\n Manual Curation BUSCO v. 2021-01-11;\n Manual Curation v. 2021-08-20\nAssembly Name :: bHirRus1.pri.v3\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 51.15x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_015227805.2-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/19/2023\n##Genome-Annotation-Data-END##
lysine-specific demethylase 5C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 ESTs, 9 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: lysine-specific demethylase 5C-like
calcium voltage-gated channel subunit alpha1 F; Derived by automated computational analysis using gene prediction method: Gnomon.
calcium voltage-gated channel subunit alpha1 F
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
voltage-dependent L-type calcium channel subunit alpha-1F
coiled-coil domain containing 22; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 22, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
coiled-coil domain containing 22, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
coiled-coil domain-containing protein 22 isoform X1
coiled-coil domain-containing protein 22 isoform X2
forkhead box P3; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: forkhead box protein P3
synapsin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded-like protein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-specific Y-encoded-like protein 4
N-alpha-acetyltransferase 10, NatA catalytic subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
N-alpha-acetyltransferase 10, NatA catalytic subunit
hydroxysteroid 17-beta dehydrogenase 10; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 33 Proteins
CXXC finger protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
CXXC finger protein 1, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein
CXXC finger protein 1, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 6 Proteins
CXXC finger protein 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 5 Proteins
CXXC-type zinc finger protein 1 isoform X3
CXXC-type zinc finger protein 1 isoform X2
CXXC-type zinc finger protein 1 isoform X1
uncharacterized LOC131378637; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378637, transcript variant X1
uncharacterized LOC131378637, transcript variant X2
uncharacterized LOC120748215; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar fusion protein MON1 homolog B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
vacuolar fusion protein MON1 homolog B-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 Proteins
vacuolar fusion protein MON1 homolog B-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 11 Proteins
vacuolar fusion protein MON1 homolog B-like isoform X2
vacuolar fusion protein MON1 homolog B-like isoform X1
tyrosine-protein phosphatase non-receptor type 18-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tyrosine-protein phosphatase non-receptor type 18-like
IMP U3 small nucleolar ribonucleoprotein 4; Derived by automated computational analysis using gene prediction method: Gnomon.
IMP U3 small nucleolar ribonucleoprotein 4
U3 small nucleolar ribonucleoprotein protein IMP4
coiled-coil domain containing 115; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain containing 115, transcript variant X1
coiled-coil domain containing 115, transcript variant X2
coiled-coil domain-containing protein 115 isoform X1
coiled-coil domain-containing protein 115 isoform X2
ubiquitin like modifier activating enzyme 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin like modifier activating enzyme 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 21 Proteins
ubiquitin-like modifier-activating enzyme 1
NADH:ubiquinone oxidoreductase subunit B11; Derived by automated computational analysis using gene prediction method: Gnomon.
NADH:ubiquinone oxidoreductase subunit B11
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
RNA binding motif protein 10; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
complement factor properdin; Derived by automated computational analysis using gene prediction method: Gnomon.
synapsin I; Derived by automated computational analysis using gene prediction method: Gnomon.