Hirundo rustica isolate bHirRus1 chromosome 36, bHirRus1.pri.v3, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026882.1.\nAssembly name: bHirRus1.pri.v3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/30. The original whole-genome shotgun project has the\naccession JADDRP000000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-AUG-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align v. DX 2.2.2.1; freebayes\n v. DX 19-07-11; gEVAL manual curation v.\n 2020-02-11; VGP assembly pipeline v. 1.6;\n Manual Curation BUSCO v. 2021-01-11;\n Manual Curation v. 2021-08-20\nAssembly Name :: bHirRus1.pri.v3\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 51.15x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_015227805.2-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/19/2023\n##Genome-Annotation-Data-END##
transportin-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 17 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
F-box/WD repeat-containing protein 9-like; Derived by automated computational analysis using gene prediction method: Gnomon.
F-box/WD repeat-containing protein 9-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
deoxyhypusine synthase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
deoxyhypusine synthase-like, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
deoxyhypusine synthase-like, transcript variant X2
deoxyhypusine synthase-like, transcript variant X3
WD repeat domain-containing protein 83-like; Derived by automated computational analysis using gene prediction method: Gnomon.
WD repeat domain-containing protein 83-like
PAT complex subunit Asterix; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 10 Proteins
lysosomal alpha-mannosidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
interleukin enhancer binding factor 3; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin enhancer binding factor 3, transcript variant X1
interleukin enhancer binding factor 3, transcript variant X3
interleukin enhancer binding factor 3, transcript variant X2
interleukin enhancer binding factor 3, transcript variant X4
interleukin enhancer binding factor 3, transcript variant X5
interleukin enhancer binding factor 3, transcript variant X6
interleukin enhancer-binding factor 3 isoform X1
interleukin enhancer-binding factor 3 isoform X3
interleukin enhancer-binding factor 3 isoform X2
interleukin enhancer-binding factor 3 isoform X4
interleukin enhancer-binding factor 3 isoform X5
interleukin enhancer-binding factor 3 isoform X6
beta-1,3-galactosyltransferase 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
queuine tRNA-ribosyltransferase catalytic subunit 1; Derived by automated computational analysis using gene prediction method: Gnomon.
queuine tRNA-ribosyltransferase catalytic subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
dynamin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 12 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
coactivator associated arginine methyltransferase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
coactivator associated arginine methyltransferase 1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
LOW QUALITY PROTEIN: histone-arginine methyltransferase CARM1
Yip1 domain family member 2; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphodiesterase 4A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 37 Proteins
cAMP-specific 3',5'-cyclic phosphodiesterase 4A
ELAV like RNA binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
ELAV like RNA binding protein 3, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 29 Proteins
ELAV like RNA binding protein 3, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins
zinc finger protein 653; Derived by automated computational analysis using gene prediction method: Gnomon.
ECSIT signaling integrator; Derived by automated computational analysis using gene prediction method: Gnomon.
evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial
calponin 1; Derived by automated computational analysis using gene prediction method: Gnomon.
elongation factor 1; Derived by automated computational analysis using gene prediction method: Gnomon.
transcription elongation factor 1 homolog
acid phosphatase 5, tartrate resistant; Derived by automated computational analysis using gene prediction method: Gnomon.
tartrate-resistant acid phosphatase type 5
nuclear factor I X; Derived by automated computational analysis using gene prediction method: Gnomon.
nuclear factor I X, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs, 49 Proteins
nuclear factor I X, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 37 Proteins
nuclear factor I X, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 34 Proteins
nuclear factor I X, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 28 Proteins
GADD45G interacting protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
RAD23 homolog A, nucleotide excision repair protein; Derived by automated computational analysis using gene prediction method: Gnomon.
RAD23 homolog A, nucleotide excision repair protein
UV excision repair protein RAD23 homolog A
calreticulin; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 1 EST, 2 long SRA reads, 8 Proteins
phenylalanyl-tRNA synthetase subunit alpha; Derived by automated computational analysis using gene prediction method: Gnomon.
phenylalanyl-tRNA synthetase subunit alpha
phenylalanine--tRNA ligase alpha subunit
synaptonemal complex central element protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
synaptonemal complex central element protein 2
glutaryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Gnomon.
glutaryl-CoA dehydrogenase, transcript variant X2
glutaryl-CoA dehydrogenase, transcript variant X1
glutaryl-CoA dehydrogenase, mitochondrial isoform X1
glutaryl-CoA dehydrogenase, mitochondrial isoform X2
microtubule associated serine/threonine kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
microtubule associated serine/threonine kinase 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
microtubule-associated serine/threonine-protein kinase 1
ribonuclease H2 subunit A; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
hook microtubule tethering protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone; Derived by automated computational analysis using gene prediction method: Gnomon.
cell division cycle 37, HSP90 cochaperone
tyrosine kinase 2; Derived by automated computational analysis using gene prediction method: Gnomon.
tyrosine kinase 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 29 Proteins
tyrosine kinase 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 long SRA reads, 6 Proteins
non-receptor tyrosine-protein kinase TYK2 isoform X1
non-receptor tyrosine-protein kinase TYK2 isoform X2
ribonucleoprotein, PTB binding 1; Derived by automated computational analysis using gene prediction method: Gnomon.
ferredoxin 2; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378472; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC120764758; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC120764758, transcript variant X1
uncharacterized LOC120764758, transcript variant X2
zinc finger protein 692-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 692-like, transcript variant X4
zinc finger protein 692-like, transcript variant X1
zinc finger protein 692-like, transcript variant X3
zinc finger protein 692-like, transcript variant X2
E3 ubiquitin-protein ligase TRIM7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 483-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
zinc finger protein CKR1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
interleukin 4 induced 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA proline (anticodon UGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
tripartite motif containing 7; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 7, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 34 Proteins
tripartite motif containing 7, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 34 Proteins
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon AAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
E3 ubiquitin-protein ligase TRIM39-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 33 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
E3 ubiquitin-protein ligase TRIM11-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase TRIM11-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
E3 ubiquitin-protein ligase TRIM11-like, transcript variant X2
E3 ubiquitin-protein ligase TRIM11-like, transcript variant X3
E3 ubiquitin-protein ligase TRIM11-like isoform X1
uncharacterized LOC120764731; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 41; Derived by automated computational analysis using gene prediction method: Gnomon.
small ribosomal subunit protein RACK1; Derived by automated computational analysis using gene prediction method: Gnomon.