Hirundo rustica isolate bHirRus1 chromosome 35, bHirRus1.pri.v3, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026881.1.\nAssembly name: bHirRus1.pri.v3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/30. The original whole-genome shotgun project has the\naccession JADDRP000000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-AUG-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align v. DX 2.2.2.1; freebayes\n v. DX 19-07-11; gEVAL manual curation v.\n 2020-02-11; VGP assembly pipeline v. 1.6;\n Manual Curation BUSCO v. 2021-01-11;\n Manual Curation v. 2021-08-20\nAssembly Name :: bHirRus1.pri.v3\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 51.15x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_015227805.2-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/19/2023\n##Genome-Annotation-Data-END##
zinc finger protein 70-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine sulfinic acid decarboxylase; Derived by automated computational analysis using gene prediction method: Gnomon.
cysteine sulfinic acid decarboxylase, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 long SRA read, 41 Proteins
cysteine sulfinic acid decarboxylase, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 18 Proteins
cysteine sulfinic acid decarboxylase, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 9 Proteins
cysteine sulfinic acid decarboxylase, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
cysteine sulfinic acid decarboxylase isoform X2
cysteine sulfinic acid decarboxylase isoform X1
cysteine sulfinic acid decarboxylase isoform X4
cysteine sulfinic acid decarboxylase isoform X3
zinc finger protein 740; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 740, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 Proteins
zinc finger protein 740, transcript variant X1
zinc finger protein 740, transcript variant X3
zinc finger protein 740, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 1 Protein
retinoic acid receptor gamma; Derived by automated computational analysis using gene prediction method: Gnomon.
retinoic acid receptor gamma, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
retinoic acid receptor gamma, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 56 Proteins
cuticle collagen 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B; Derived by automated computational analysis using gene prediction method: Gnomon.
eukaryotic translation initiation factor 4B, transcript variant X2
eukaryotic translation initiation factor 4B, transcript variant X1
eukaryotic translation initiation factor 4B isoform X2
eukaryotic translation initiation factor 4B isoform X1
keratin 18; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 51 Proteins
keratin 8; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 201 Proteins
keratin, type II cytoskeletal 4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 132 Proteins
keratin, type II cytoskeletal 6C-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 121 Proteins
keratin, type II cytoskeletal 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 211 Proteins
keratin, type II cytoskeletal 6A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 218 Proteins
keratin, type II cytoskeletal 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 185 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 194 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 230 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 157 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 103 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: keratin, type II cytoskeletal 5-like
keratin, type II cytoskeletal 75-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 233 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 247 Proteins
keratin, type II cytoskeletal 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
keratin 7; Derived by automated computational analysis using gene prediction method: Gnomon.
keratin 80; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
BCDIN3 domain containing RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Gnomon.
BCDIN3 domain containing RNA methyltransferase
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 10 Proteins
Fas apoptotic inhibitory molecule 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 long SRA reads, 16 Proteins
aquaporin-2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59 Proteins
aquaporin 5; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 60 Proteins
pro-glucagon-like; Derived by automated computational analysis using gene prediction method: Gnomon.
pro-glucagon-like, transcript variant X1
pro-glucagon-like, transcript variant X2
solute carrier family 4 member 8; Derived by automated computational analysis using gene prediction method: Gnomon.
electroneutral sodium bicarbonate exchanger 1
uncharacterized LOC120764699; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC120764699, transcript variant X1
uncharacterized LOC120764699, transcript variant X4
uncharacterized LOC120764699, transcript variant X5
uncharacterized LOC120764699, transcript variant X6
uncharacterized LOC120764699, transcript variant X2
uncharacterized LOC120764699, transcript variant X7
uncharacterized LOC120764699, transcript variant X3
uncharacterized protein LOC120764699 isoform X1
uncharacterized protein LOC120764699 isoform X2
polypeptide N-acetylgalactosaminyltransferase 6; Derived by automated computational analysis using gene prediction method: Gnomon.
polypeptide N-acetylgalactosaminyltransferase 6, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 29 Proteins
polypeptide N-acetylgalactosaminyltransferase 6, transcript variant X2
polypeptide N-acetylgalactosaminyltransferase 6
chymotrypsin like elastase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 40 Proteins
chymotrypsin-like elastase family member 1
chymotrypsin-like elastase family member 1; Derived by automated computational analysis using gene prediction method: Gnomon.
bridging integrator 2; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 8 Proteins