Hirundo rustica isolate bHirRus1 chromosome 32, bHirRus1.pri.v3, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026878.1.\nAssembly name: bHirRus1.pri.v3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/30. The original whole-genome shotgun project has the\naccession JADDRP000000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-AUG-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align v. DX 2.2.2.1; freebayes\n v. DX 19-07-11; gEVAL manual curation v.\n 2020-02-11; VGP assembly pipeline v. 1.6;\n Manual Curation BUSCO v. 2021-01-11;\n Manual Curation v. 2021-08-20\nAssembly Name :: bHirRus1.pri.v3\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 51.15x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_015227805.2-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/19/2023\n##Genome-Annotation-Data-END##
N-acetylmuramoyl-L-alanine amidase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
zinc finger protein 664-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 664-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 105 Proteins
zinc finger protein 664-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 20-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger and SCAN domain-containing protein 20-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 501-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 128 Proteins
zinc finger protein 501-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 125 Proteins
zinc finger protein 501-like, transcript variant X2
uncharacterized LOC131378729; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 271-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
uncharacterized LOC131378730; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
zinc finger protein 239-like, transcript variant X1
zinc finger protein 850-like; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 36 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
zinc finger protein 91-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 221 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 91-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 29 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 long SRA reads, 16 Proteins
zinc finger protein 239-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins
zinc finger protein 239-like, transcript variant X4
zinc finger protein 239-like, transcript variant X5
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 345-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 387 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 235 Proteins
zinc finger protein 345-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 349 Proteins
zinc finger protein 892-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 260-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 260-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 long SRA reads, 255 Proteins
zinc finger protein 260-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 255 Proteins
uncharacterized LOC120764620; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 long SRA reads, 102 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 243 Proteins
mucolipin-1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378726; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 37 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 196 Proteins