Hirundo rustica isolate bHirRus1 chromosome 31, bHirRus1.pri.v3, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo.
REFSEQ INFORMATION: The reference sequence is identical to\nCM026877.1.\nAssembly name: bHirRus1.pri.v3\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2021/11/30. The original whole-genome shotgun project has the\naccession JADDRP000000000.3.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 20-AUG-2021\nAssembly Method :: FALCON v. DX 2.0.1; FALCON-Unzip v. DX\n 1.2.1; purge_dups v. DX 19-08-10;\n scaff10X v. DX 2.0.3; bionano Solve v. DX\n 3.4.0; Salsa2 HiC v. DX 2.2.0; Arrow\n polishing and gap filling v. DX 7.0.1.1;\n Longranger Align v. DX 2.2.2.1; freebayes\n v. DX 19-07-11; gEVAL manual curation v.\n 2020-02-11; VGP assembly pipeline v. 1.6;\n Manual Curation BUSCO v. 2021-01-11;\n Manual Curation v. 2021-08-20\nAssembly Name :: bHirRus1.pri.v3\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 51.15x\nSequencing Technology :: PacBio Sequel I CLR; Illumina NovaSeq;\n Arima Genomics Hi-C; Bionano Genomics DLS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: GCF_015227805.2-RS_2023_07\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.1\nAnnotation Method :: Gnomon; cmsearch; tRNAscan-SE\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\nAnnotation Date :: 07/19/2023\n##Genome-Annotation-Data-END##
uncharacterized LOC120764525; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
zinc finger protein 16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 62 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read, 81 Proteins
serine/threonine-protein kinase PAK 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
serine/threonine-protein kinase PAK 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC131378721; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
uncharacterized LOC120764527; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 391-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
uncharacterized LOC120764581; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378722; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378724; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC120764528; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 773-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain, transcript variant X1
class I histocompatibility antigen, F10 alpha chain, transcript variant X2
class I histocompatibility antigen, F10 alpha chain isoform X1
class I histocompatibility antigen, F10 alpha chain isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 172 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 178 Proteins
class I histocompatibility antigen, F10 alpha chain, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 2 long SRA reads, 178 Proteins
class I histocompatibility antigen, F10 alpha chain isoform X3
uncharacterized LOC131378723; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 long SRA read
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 24 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 143 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
zinc finger protein 239-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
zinc finger protein 239-like, transcript variant X2
class I histocompatibility antigen, F10 alpha chain
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 3 long SRA reads, 114 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins
class II histocompatibility antigen, B-L beta chain-like
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: class II histocompatibility antigen, B-L beta chain-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins
zinc finger protein 420-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 214 Proteins
zinc finger protein interacting with ribonucleoprotein K-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein interacting with ribonucleoprotein K-like
zinc finger protein 572-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 572-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
GRIP and coiled-coil domain-containing protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97 Proteins
uncharacterized LOC120764563; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 239-like, transcript variant X3
zinc finger protein 239-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 137 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: serine/threonine-protein kinase PAK 3-like
zinc finger protein 626-like; Derived by automated computational analysis using gene prediction method: Gnomon.
hydroperoxide isomerase ALOXE3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins
uncharacterized LOC120764584; Derived by automated computational analysis using gene prediction method: Gnomon.
peptidoglycan recognition protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC131378725; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC120764587; Derived by automated computational analysis using gene prediction method: Gnomon.
TOG array regulator of axonemal microtubules protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
TOG array regulator of axonemal microtubules protein 2-like