Nitratireductor kimnyeongensis strain KACC 11904 plasmid pNK_1.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Nitratireductor.
Nitratireductor porphyridii sp. nov., isolated from a marine red alga
Submitted (05-JUL-2021) life science, Chung-Ang university, 84, Heukseok-ro, Dongjak-gu, Seoul 06974, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP078144.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.9b\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 60.84x\nSequencing Technology :: Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/07/2023 06:20:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,871\nCDSs (total) :: 3,812\nGenes (coding) :: 3,787\nCDSs (with protein) :: 3,787\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 25\nCDSs (without protein) :: 25\nPseudo Genes (ambiguous residues) :: 0 of 25\nPseudo Genes (frameshifted) :: 10 of 25\nPseudo Genes (incomplete) :: 17 of 25\nPseudo Genes (internal stop) :: 7 of 25\nPseudo Genes (multiple problems) :: 7 of 25\n##Genome-Annotation-Data-END##
type strain of Nitratireductor kimnyeongensis
COORDINATES: similar to AA sequence:RefSeq:WP_018426018.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007007165.1
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007166.1
sugar ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007167.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018426022.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019322.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011581563.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400445.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006724698.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007007172.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004684910.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
COORDINATES: similar to AA sequence:RefSeq:WP_020009060.1
GO:0050114 - myo-inosose-2 dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007176.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007177.1
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013960580.1
COORDINATES: similar to AA sequence:RefSeq:WP_007790939.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
CDP-alcohol phosphatidyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596405.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007183.1
GO:0055085 - transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB
COORDINATES: similar to AA sequence:RefSeq:WP_008226503.1
sn-glycerol-3-phosphate ABC transporter permease UgpA
COORDINATES: similar to AA sequence:RefSeq:WP_005863708.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015794 - glycerol-3-phosphate transmembrane transport [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter permease UgpE
COORDINATES: similar to AA sequence:RefSeq:WP_012973295.1
sn-glycerol-3-phosphate import ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_007007186.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007187.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659077.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007189.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC
COORDINATES: similar to AA sequence:RefSeq:WP_006326661.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007191.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007192.1
COORDINATES: similar to AA sequence:RefSeq:WP_013528984.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006326662.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008126221.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010007.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007200.1
COORDINATES: similar to AA sequence:RefSeq:WP_007437618.1
GO:0008927 - mannonate dehydratase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014762319.1
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007208.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007209.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007210.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593557.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593559.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007213.1
neutral/alkaline non-lysosomal ceramidase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008593562.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593564.1
COORDINATES: similar to AA sequence:RefSeq:WP_008593566.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007216.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007112343.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010629539.1
GO:0042597 - periplasmic space [Evidence IEA]
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010629540.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007220.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007007221.1
GO:0008777 - acetylornithine deacetylase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_007007223.1
TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_007007225.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007226.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007227.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007007228.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007229.1
GO:0016647 - oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018012553.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007231.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010913511.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009449897.1
hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_007007234.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007235.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007236.1
COORDINATES: similar to AA sequence:RefSeq:WP_003567609.1
COORDINATES: similar to AA sequence:RefSeq:WP_018238149.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007239.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007240.1
COORDINATES: protein motif:HMM:NF018979.2
GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007242.1
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007243.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007244.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007245.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007255916.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007007248.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007249.1
GO:0048472 - threonine-phosphate decarboxylase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007250.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_013531120.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007007252.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013652772.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007007254.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596005.1
COORDINATES: protein motif:HMM:TIGR02435.1
GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]
GO:0019250 - aerobic cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018011668.1
GO:0016993 - precorrin-8X methylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007259.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011655351.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007261.1
GO:0016994 - precorrin-6A reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007262.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE
COORDINATES: similar to AA sequence:RefSeq:WP_010910123.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595997.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007266.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015317324.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007268.1
GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007007269.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007007270.1
GO:0043819 - precorrin-6A synthase (deacetylating) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007271.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595988.1
GO:0016853 - isomerase activity [Evidence IEA]; GO:0048029 - monosaccharide binding [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007280.1
COORDINATES: similar to AA sequence:RefSeq:WP_009834578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007283.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007284.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007285.1
COORDINATES: similar to AA sequence:RefSeq:WP_015799887.1
Lrp/AsnC family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008596398.1
saccharopine dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007288.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007289.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007290.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007293.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007294.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007295.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007296.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007297.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596426.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596428.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426837.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008596430.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009756447.1
COORDINATES: similar to AA sequence:RefSeq:WP_008596432.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756445.1
COORDINATES: similar to AA sequence:RefSeq:WP_010659002.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007304.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007305.1
COORDINATES: similar to AA sequence:RefSeq:WP_018856687.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007307.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007308.1
COORDINATES: similar to AA sequence:RefSeq:WP_003518470.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
putative N-acetylmannosamine-6-phosphate 2-epimerase
COORDINATES: similar to AA sequence:RefSeq:WP_007007311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330260.1
GO:0008660 - 1-aminocyclopropane-1-carboxylate deaminase activity [Evidence IEA]
GO:0042217 - 1-aminocyclopropane-1-carboxylate catabolic process [Evidence IEA]
1-aminocyclopropane-1-carboxylate deaminase
COORDINATES: similar to AA sequence:RefSeq:WP_007007316.1
Lrp/AsnC ligand binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008280014.1
GO:0008800 - beta-lactamase activity [Evidence IEA]
GO:0030655 - beta-lactam antibiotic catabolic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007319.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009756434.1
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007007321.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007322.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007323.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007324.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007325.1
COORDINATES: similar to AA sequence:RefSeq:WP_015667763.1
COORDINATES: similar to AA sequence:RefSeq:WP_008595981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007329.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007330.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007332.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007333.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007334.1
COORDINATES: similar to AA sequence:RefSeq:WP_007007335.1
COORDINATES: similar to AA sequence:RefSeq:WP_017996418.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913703.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011654083.1
COORDINATES: similar to AA sequence:RefSeq:WP_003543449.1
COORDINATES: similar to AA sequence:RefSeq:WP_015500457.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007199358.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007342.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF013539.2
COORDINATES: protein motif:HMM:NF012348.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011047561.1
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF014684.2
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014434076.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019238961.1
COORDINATES: similar to AA sequence:RefSeq:WP_012332137.1
COORDINATES: similar to AA sequence:RefSeq:WP_011443012.1
COORDINATES: similar to AA sequence:RefSeq:WP_008838824.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007007352.1
GGDEF domain-containing phosphodiesterase
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF012515.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002723188.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007010291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801248.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503613.1
COORDINATES: similar to AA sequence:RefSeq:WP_007801250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010295.1
NAD/NADP octopine/nopaline dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018429166.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007010297.1
COORDINATES: similar to AA sequence:RefSeq:WP_018429168.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006338703.1
COORDINATES: similar to AA sequence:RefSeq:WP_020594371.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013525335.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526380.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009157.1
COORDINATES: similar to AA sequence:RefSeq:WP_018238118.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009160.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009161.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007009162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009163.1
COORDINATES: similar to AA sequence:RefSeq:WP_002720319.1
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012427545.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007009166.1
COORDINATES: similar to AA sequence:RefSeq:WP_011474060.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009168.1
GO:0016836 - hydro-lyase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012772.2
GO:0071111 - cyclic-guanylate-specific phosphodiesterase activity [Evidence IEA]; GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF014044.2
COORDINATES: similar to AA sequence:RefSeq:WP_007009179.1
COORDINATES: similar to AA sequence:RefSeq:WP_007009180.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010738.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010739.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010660794.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019565871.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010741.1
COORDINATES: similar to AA sequence:RefSeq:WP_007879071.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010742.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010743.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010744.1
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007010746.1
COORDINATES: similar to AA sequence:RefSeq:WP_007630633.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010748.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010749.1
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: similar to AA sequence:RefSeq:WP_009756215.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007010752.1
COORDINATES: similar to AA sequence:RefSeq:WP_009756213.1
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010754.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010755.1
dihydroorotate dehydrogenase electron transfer subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009449961.1
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010757.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010758.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
GO:0009116 - nucleoside metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010759.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010760.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010761.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539474.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010764.1
GO:0016531 - copper chaperone activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018183152.1
GO:0031966 - mitochondrial membrane [Evidence IEA]
GO:0033617 - mitochondrial cytochrome c oxidase assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009756223.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010766.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010767.1
GO:0030246 - carbohydrate binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008596384.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010769.1
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010770.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010771.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007010772.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316214.1
GO:0005436 - sodium:phosphate symporter activity [Evidence IEA]
GO:0044341 - sodium-dependent phosphate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018698476.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_007010570.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010571.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009449941.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009449940.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009449939.1
COORDINATES: similar to AA sequence:RefSeq:WP_009449935.1
GO:0050661 - NADP binding [Evidence IEA]; GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
NADP-dependent phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_008596394.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010578.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010579.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004692070.1