Cereibacter azotoformans strain SY5 plasmid p2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Cereibacter.
Isolation, Identification and Complete Genome Analysis of Rhodobacter sphaeroides SY5 with Enhancing Effect on Disease Resistance of Eriocheir sinensis
Submitted (18-DEC-2021) National Pathogen Collection Center for Aquatic Animals, Shanghai Ocean University, No.999,Hucheng ring road, Shanghai 201306, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP090024.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 165.02x\nSequencing Technology :: Illumina HiSeq; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 17:54:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,393\nCDSs (total) :: 4,323\nGenes (coding) :: 4,157\nCDSs (with protein) :: 4,157\nGenes (RNA) :: 70\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 3\nPseudo Genes (total) :: 166\nCDSs (without protein) :: 166\nPseudo Genes (ambiguous residues) :: 0 of 166\nPseudo Genes (frameshifted) :: 80 of 166\nPseudo Genes (incomplete) :: 131 of 166\nPseudo Genes (internal stop) :: 25 of 166\nPseudo Genes (multiple problems) :: 61 of 166\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011331389.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011331390.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911176.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009819909.1
COORDINATES: similar to AA sequence:RefSeq:WP_009489075.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606245.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009209118.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002722058.1
COORDINATES: similar to AA sequence:RefSeq:WP_006725041.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911156.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067065.1
COORDINATES: similar to AA sequence:RefSeq:WP_013067064.1
GO:0003824 - catalytic activity [Evidence IEA]
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013067063.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013067062.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012476889.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612055.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017273156.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_076611989.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family transposase zinc-finger binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910433.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611711.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012226942.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011910383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842454.1
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011391296.1
COORDINATES: similar to AA sequence:RefSeq:WP_011048572.1
COORDINATES: similar to AA sequence:RefSeq:WP_018896748.1
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013069273.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010396932.1
COORDINATES: similar to AA sequence:RefSeq:WP_013069275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012641115.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011910319.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911153.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011840471.1
COORDINATES: similar to AA sequence:RefSeq:WP_010140769.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000904895.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017833.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911150.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763537.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911148.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911147.1
COORDINATES: similar to AA sequence:RefSeq:WP_011331449.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911145.1
COORDINATES: similar to AA sequence:RefSeq:WP_011836246.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009564991.1
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911141.1
GO:0042597 - periplasmic space [Evidence IEA]
GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0050626 - trimethylamine-N-oxide reductase (cytochrome c) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012733060.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011911139.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911138.1
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012640868.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911135.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002723818.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012640994.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911132.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911131.1
COORDINATES: similar to AA sequence:RefSeq:WP_011337109.1
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911130.1
COORDINATES: similar to AA sequence:RefSeq:WP_002722931.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911128.1
COORDINATES: similar to AA sequence:RefSeq:WP_003234247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911126.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911125.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911124.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911123.1
COORDINATES: similar to AA sequence:RefSeq:WP_006724063.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911122.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911121.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011840098.1
LysR family transcriptional regulator ArgP
COORDINATES: similar to AA sequence:RefSeq:WP_011911118.1
COORDINATES: similar to AA sequence:RefSeq:WP_006215039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911117.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396630.1
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911115.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911213.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911212.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911209.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911208.1
COORDINATES: similar to AA sequence:RefSeq:WP_015299486.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911206.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911205.1
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911203.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911202.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911201.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911200.1
phage tail sheath C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010314529.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911198.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011911196.1
COORDINATES: similar to AA sequence:RefSeq:WP_010967405.1
COORDINATES: protein motif:HMM:NF025953.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911193.1
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011911192.1
COORDINATES: similar to AA sequence:RefSeq:WP_002723748.1
GO:0000041 - transition metal ion transport [Evidence IEA]
energy-coupling factor ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_011911190.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015920744.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911188.1
COORDINATES: similar to AA sequence:RefSeq:WP_009563899.1
methionine ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011911186.1
PLP-dependent aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008283081.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910977.1
Cys/Met metabolism pyridoxal-phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_011646324.1
COORDINATES: similar to AA sequence:RefSeq:WP_008283078.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011911180.1
COORDINATES: similar to AA sequence:RefSeq:WP_002724915.1
DnaA N-terminal domain-containing protein