Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Complete genome sequences of six strains of the genus Methylobacterium
Complete sequence of plasmid2 of Methylobacterium radiotolerans JCM 2831
Submitted (19-MAR-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001003.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4003781\nSource DNA and bacteria available from Christopher J. Marx\n(cmarx@oeb.harvard.edu)\nContacts: Christopher J. Marx (cmarx@oeb.harvard.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/24/2023 01:53:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,610\nCDSs (total) :: 6,527\nGenes (coding) :: 6,431\nCDSs (with protein) :: 6,431\nGenes (RNA) :: 83\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 60\nncRNAs :: 5\nPseudo Genes (total) :: 96\nCDSs (without protein) :: 96\nPseudo Genes (ambiguous residues) :: 0 of 96\nPseudo Genes (frameshifted) :: 36 of 96\nPseudo Genes (incomplete) :: 74 of 96\nPseudo Genes (internal stop) :: 22 of 96\nPseudo Genes (multiple problems) :: 31 of 96\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylobacterium radiotolerans
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007975098.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: similar to AA sequence:RefSeq:WP_012329466.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368828.1
COORDINATES: similar to AA sequence:RefSeq:WP_002933248.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010368832.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368834.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368836.1
COORDINATES: similar to AA sequence:RefSeq:WP_005276913.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368847.1
COORDINATES: similar to AA sequence:RefSeq:WP_017113439.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368851.1
COORDINATES: similar to AA sequence:RefSeq:WP_017115798.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363003.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010363005.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017160625.1
COORDINATES: similar to AA sequence:RefSeq:WP_007968798.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_010363013.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: similar to AA sequence:RefSeq:WP_012329487.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012329488.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363021.1
COORDINATES: similar to AA sequence:RefSeq:WP_015462652.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363025.1
COORDINATES: similar to AA sequence:RefSeq:WP_010363027.1
P-type conjugative transfer protein VirB9
COORDINATES: similar to AA sequence:RefSeq:WP_006210408.1
COORDINATES: similar to AA sequence:RefSeq:WP_008934404.1
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015462648.1
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017160641.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329497.1
COORDINATES: protein motif:HMM:NF037106.2
COORDINATES: similar to AA sequence:RefSeq:WP_015462644.1
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_007968816.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007968818.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_007968821.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_010363048.1
COORDINATES: similar to AA sequence:RefSeq:WP_007968825.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329506.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368854.1
COORDINATES: similar to AA sequence:RefSeq:WP_010368856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329509.1
COORDINATES: similar to AA sequence:RefSeq:WP_017160643.1