Thiomonas arsenitoxydans plasmid pTHI, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Thiomonas.
Submitted (22-JUL-2010) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFSEQ INFORMATION: The reference sequence is identical to\nFP475957.1.\nAnnotation results relative to BLAST similarities, COG\nassignations, enzymatic function prediction (PRIAM software), TMHMM\nand SignalP predictions, and synteny conservation (Syntonizer\nsoftware) are available in the MicroScope annotation system\nhttp://www.genoscope.cns.fr/agc/microscope.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/24/2022 02:12:52\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,649\nCDSs (total) :: 3,599\nGenes (coding) :: 3,531\nCDSs (with protein) :: 3,531\nGenes (RNA) :: 50\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 3\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 68\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 19 of 68\nPseudo Genes (incomplete) :: 55 of 68\nPseudo Genes (internal stop) :: 8 of 68\nPseudo Genes (multiple problems) :: 13 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
8.1 : DNA replication, recombination, and repair
COORDINATES: protein motif:HMM:NF013793.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR00180.1
ParB/RepB/Spo0J family partition protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF023926.2
COORDINATES: similar to AA sequence:RefSeq:WP_012077418.1
COORDINATES: similar to AA sequence:RefSeq:WP_003089120.1
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific [Evidence IEA]
Hg(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009682418.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003150552.1
GO:0045340 - mercury ion binding [Evidence IEA]
mercury resistance system periplasmic binding protein MerP
COORDINATES: similar to AA sequence:RefSeq:WP_007512887.1
GDCCVxC domain-containing (seleno)protein
17 : Mobile and extrachromosomal element functions
COORDINATES: similar to AA sequence:RefSeq:WP_020909877.1
GO:0004803 - transposase activity [Evidence IEA]
Tn3-like element ISAzs17 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014028961.1
GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
putative toxin-antitoxin system toxin component, PIN family
COORDINATES: similar to AA sequence:RefSeq:WP_013105051.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012477429.1
COORDINATES: protein motif:HMM:NF014691.2
COORDINATES: protein motif:HMM:NF037437.2
COORDINATES: similar to AA sequence:RefSeq:WP_006762906.1
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: similar to AA sequence:RefSeq:WP_014003756.1
COORDINATES: similar to AA sequence:RefSeq:WP_019087614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798656.1
COORDINATES: similar to AA sequence:RefSeq:WP_009242151.1
COORDINATES: similar to AA sequence:RefSeq:WP_019897068.1
COORDINATES: similar to AA sequence:RefSeq:WP_004682593.1
COORDINATES: similar to AA sequence:RefSeq:WP_020183016.1
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: similar to AA sequence:RefSeq:WP_005671614.1
COORDINATES: similar to AA sequence:RefSeq:WP_017166895.1
COORDINATES: protein motif:HMM:NF037421.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010895212.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: protein motif:HMM:NF038091.1
COORDINATES: protein motif:HMM:TIGR02781.1
P-type conjugative transfer protein VirB9
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF019608.2
Type IV secretory pathway, VirB5 component
COORDINATES: similar to AA sequence:RefSeq:WP_010895204.1
VirB4 family type IV secretion/conjugal transfer ATPase
COORDINATES: protein motif:HMM:NF017269.2
GO:0019867 - outer membrane [Evidence IEA]
glycine zipper 2TM domain-containing protein
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017116026.1
COORDINATES: similar to AA sequence:RefSeq:WP_014028940.1
COORDINATES: similar to AA sequence:RefSeq:WP_015397462.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015916926.1