Sulfolobus islandicus L.D.8.5 plasmid pLD8501, complete sequence.
Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus.
Contemporary genome evolution in thermophilic Archaea
Submitted (03-SEP-2009) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001732.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4023472\nSource DNA and organism available from Rachel Whitaker\n(rwhitaker@life.uiuc.edu)\nContacts: Rachel Whitaker (rwhitaker@life.uiuc.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Sulfolobus islandicus L.D.8.5\nGOLD Stamp ID :: Gi01317\nIsolation Site :: Lassen National Park in California\nIsolation Country :: USA\nLatitude :: \"4,049,703\"\nLongitude :: \"-12,142,752\"\nOxygen Requirement :: Aerobe\nCell Shape :: Coccus-shaped\nMotility :: Nonmotile\nSporulation :: Nonsporulating\nTemperature Range :: Hyperthermophile\nTemperature Optimum :: 75 - 85C\nGram Staining :: gram-\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Fresh water\nPhenotypes :: Acidophile\nEnergy Source :: Lithotroph\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 01:17:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,090\nCDSs (total) :: 3,039\nGenes (coding) :: 2,846\nCDSs (with protein) :: 2,846\nGenes (RNA) :: 51\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 2\nPseudo Genes (total) :: 193\nCDSs (without protein) :: 193\nPseudo Genes (ambiguous residues) :: 0 of 193\nPseudo Genes (frameshifted) :: 126 of 193\nPseudo Genes (incomplete) :: 89 of 193\nPseudo Genes (internal stop) :: 43 of 193\nPseudo Genes (multiple problems) :: 55 of 193\nCRISPR Arrays :: 4\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009993046.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011277414.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716267.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716268.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716269.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716270.1
COORDINATES: similar to AA sequence:RefSeq:WP_011277421.1
COORDINATES: similar to AA sequence:RefSeq:WP_013774993.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012736005.1
COORDINATES: similar to AA sequence:RefSeq:WP_012953408.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716275.1
ParB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF026297.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009992233.1
COORDINATES: similar to AA sequence:RefSeq:WP_009992229.1
COORDINATES: similar to AA sequence:RefSeq:WP_016731337.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718858.1
COORDINATES: protein motif:HMM:NF014273.2
COORDINATES: similar to AA sequence:RefSeq:WP_014512451.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014512450.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009071196.1
COORDINATES: similar to AA sequence:RefSeq:WP_009071195.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718860.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718302.1
COORDINATES: similar to AA sequence:RefSeq:WP_012953069.1
COORDINATES: similar to AA sequence:RefSeq:WP_012953070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012716286.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718268.1
COORDINATES: similar to AA sequence:RefSeq:WP_012718707.1
COORDINATES: similar to AA sequence:RefSeq:WP_016730940.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013776685.1
COORDINATES: similar to AA sequence:RefSeq:WP_016731771.1
COORDINATES: similar to AA sequence:RefSeq:WP_009992249.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012953430.1
COORDINATES: similar to AA sequence:RefSeq:WP_012952849.1
GO:0090529 - cell septum assembly [Evidence IEA]; GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]