Sphingomonas insulae strain KCTC 12872 plasmid unnamed4, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.
Genome sequence of Sphingomonas insulae KCTC 12872
Submitted (06-JAN-2020) Agriculture & Life Science, Kyungpook National University, Daehak-ro 80, Daegu 41566, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP048423.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 06-JAN-2020\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 276.0x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/25/2023 02:15:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,611\nCDSs (total) :: 3,546\nGenes (coding) :: 3,472\nCDSs (with protein) :: 3,472\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 57 of 74\nPseudo Genes (incomplete) :: 18 of 74\nPseudo Genes (internal stop) :: 3 of 74\nPseudo Genes (multiple problems) :: 4 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013039110.1
GO:0005215 - transporter activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_008997001.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011445799.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012561204.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018251383.1
COORDINATES: similar to AA sequence:RefSeq:WP_008832610.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_016509651.1
COORDINATES: similar to AA sequence:RefSeq:WP_010338124.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213373.1
COORDINATES: similar to AA sequence:RefSeq:WP_008830766.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018251363.1
COORDINATES: similar to AA sequence:RefSeq:WP_018251365.1
COORDINATES: similar to AA sequence:RefSeq:WP_008997054.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011502705.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399475.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010399477.1
COORDINATES: similar to AA sequence:RefSeq:WP_017904420.1
COORDINATES: similar to AA sequence:RefSeq:WP_019515412.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019342289.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181974.1
COORDINATES: similar to AA sequence:RefSeq:WP_010126429.1
GO:0019628 - urate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013396335.1
COORDINATES: similar to AA sequence:RefSeq:WP_012049123.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009365753.1
COORDINATES: similar to AA sequence:RefSeq:WP_010163716.1
COORDINATES: similar to AA sequence:RefSeq:WP_008208977.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012641324.1
COORDINATES: similar to AA sequence:RefSeq:WP_019516961.1
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019368240.1
COORDINATES: similar to AA sequence:RefSeq:WP_009798102.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_015459402.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter