Culex pipiens pipiens mitochondrion, complete genome.
type: Entry
definition: Culex pipiens pipiens mitochondrion, complete genome.
sequence version: NC_015079.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_015079.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Culex pipiens pipiens
organism: Culex pipiens pipiens
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Culicini; Culex; Culex.
reference: 1
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to HQ724614.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 14856
topology: circular
so has quality: SO_0000988
location: 1..14856
location: region:1-14856:1
RO_0002162: 38569

NC_015079
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: Radiation of Wolbachia endosymbiont drives mitochondrial diversity in the Culex pipiens mosquito
author: Atyame, C.
author: Weill, M.
author: Duron, O.
journal: Unpublished

2
title: Direct Submission
journal: Submitted (07-FEB-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Atyame, C.
author: Weill, M.
author: Duron, O.
journal: Submitted (16-DEC-2010) CMS-UMR 5554 ISEM, University of Montpellier 2, Place Eugene Bataillon, Montpellier 34095 Cedex5, France

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14856:1
position: 14856
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-14856:1:source
so part of: sequence
organism: Culex pipiens pipiens
organelle: mitochondrion
mol type: genomic DNA
sub species: pipiens
country: Tunisia
note: lineage=Tn

38569
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Ile
so part of: sequence
location: 2..69
location: region:2-69:1
so has part: feature:2-69:1:region

position:2:1
position: 2
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:69:1
position: 69
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-69:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Gln
so part of: sequence
location: complement(70..138)
location: region:70-138:-1
so has part: feature:70-138:-1:region

position:70:-1
position: 70
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138:-1
position: 138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:70-138:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Met
so part of: sequence
location: 142..210
location: region:142-210:1
so has part: feature:142-210:1:region

position:142:1
position: 142
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:210:1
position: 210
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:142-210:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND2
so part of: sequence
location: 211..1233
location: region:211-1233:1
so has part: feature:211-1233:1:exon
subclass of: SO_0000010

10200340
type: Gene
SIO_000068: ncbigene

position:211:1
position: 211
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1233:1
position: 1233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:211-1233:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND2
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MKKISNNIFLIMLIFGSLITISANSWLGAWMGLEINLLSFIPLMNEGKKNLMTSESSLKYFLTQAFASSILLFAIILMMMSFNLNWMNNNFYELLILSTLLLKNGAAPFHFWFPGVMEGLSWINGLILMTWQKIAPLMLISYNINYNFFFIAIILSMIIGALGGLNQTSLRKLMAFSSINHLGWMLMAMMNNELLWLIYFVFYFFLSMSIVLLFNNLKLFHFNQIFNFSMMNPVIKFFLFLNLLSLGGLPPFLGFLPKWLVIQNLVETNQLFLLFISVCLTLITLYYYLRMSYSIYMLNFNKNSWMLMNNFSNKNMTFILTMNFFSIMGLMIISLIYLIL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 211..1233
location: region:211-1233:1
so has part: feature:211-1233:1:exon

YP_004221848.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:211-1233:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Trp
so part of: sequence
location: 1235..1303
location: region:1235-1303:1
so has part: feature:1235-1303:1:region

position:1235:1
position: 1235
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1303:1
position: 1303
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1235-1303:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Cys
so part of: sequence
location: complement(1304..1369)
location: region:1304-1369:-1
so has part: feature:1304-1369:-1:region

position:1304:-1
position: 1304
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1369:-1
position: 1369
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1304-1369:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Tyr
so part of: sequence
location: complement(1382..1447)
location: region:1382-1447:-1
so has part: feature:1382-1447:-1:region

position:1382:-1
position: 1382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1447:-1
position: 1447
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1382-1447:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: COX1
so part of: sequence
location: <1446..2982
location: region:1446-2982:1
so has part: feature:1446-2982:1:exon
subclass of: SO_0000010

10200328
type: Gene
SIO_000068: ncbigene

position:1446:1
position: 1446
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:2982:1
position: 2982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1446-2982:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: COX1
note: start codon not determined; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:2982,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit I
translation: SRQWLFSTNHKDIGTLYFIFGAWAGMVGTSLSLLIRAELSQPGVFIGNDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSLVENGAGTGWTVYPPLSSGTAHAGASVDLAIFSLHLAGISSILGAVNFITTVINMRSSGITLDRMPLFVWSVVITAVLLLLSLPVLAGAITMLLTDRNLNTSFFDPIGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIITQESGKKETFGTLGMIYAMLAIGLLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAVPTGIKIFSWLATLHGTQLNYTPALLWSLGFVFLFTVGGLTGVVLANSSIDIVLHDTYYVVAHFHYVLSMGAVFAIMAGFIHWYPLLTGLVMNPTWLKIQFTIMFIGVNLTFFPQHFLGLAGMPRRYSDFPDSYLAWNIVSSLGSTISLFGIVFFLFIIWESMISQRTPSFPMQLSSSIEWYHTLPPAEHTYAELPLLSSN
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: <1446..2982
location: region:1446-2982:1
so has part: feature:1446-2982:1:exon

YP_004221849.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1446-2982:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2983..3049
location: region:2983-3049:1
so has part: feature:2983-3049:1:region

position:2983:1
position: 2983
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3049:1
position: 3049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2983-3049:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: COX2
so part of: sequence
location: 3055..3739
location: region:3055-3739:1
so has part: feature:3055-3739:1:exon
subclass of: SO_0000010

10200329
type: Gene
SIO_000068: ncbigene

position:3055:1
position: 3055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3739:1
position: 3739
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3055-3739:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: COX2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3739,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit II
translation: MATWANLGLQNSSSPLMEQLNFFHDHTVLILIMITVMITYVMGMLFFNKFTNRYLLHGQTIEIIWTILPAIILMFIAFPSLRLLYLLDEINSPLITLKAIGHQWYWSYEYSNFMNLEFDSYMIPTNELDLNGFRLLDVDNRIILPLNNQIRILVTATDVLHSWTVPSLGVKIDATPGRLNQTNFLINQSGLFFGQCSEICGANHSFMPIVIESIPMNYFIKWVSSQLN
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 3055..3739
location: region:3055-3739:1
so has part: feature:3055-3739:1:exon

YP_004221850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3055-3739:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Lys
so part of: sequence
location: 3740..3810
location: region:3740-3810:1
so has part: feature:3740-3810:1:region

position:3740:1
position: 3740
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3810:1
position: 3810
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3740-3810:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Asp
so part of: sequence
location: 3821..3888
location: region:3821-3888:1
so has part: feature:3821-3888:1:region

position:3821:1
position: 3821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3888:1
position: 3888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3821-3888:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ATP8
so part of: sequence
location: 3898..4050
location: region:3898-4050:1
so has part: feature:3898-4050:1:exon
subclass of: SO_0000010

10200330
type: Gene
SIO_000068: ncbigene

position:3898:1
position: 3898
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4050:1
position: 4050
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3898-4050:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ATP8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MAPISWLTLFLVFSITLVVFNVKNYFCVSYSSNQTAQNINIKSFKMNWKW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 3898..4050
location: region:3898-4050:1
so has part: feature:3898-4050:1:exon

YP_004221851.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3898-4050:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ATP6
so part of: sequence
location: 4044..4724
location: region:4044-4724:1
so has part: feature:4044-4724:1:exon
subclass of: SO_0000010

10200331
type: Gene
SIO_000068: ncbigene

position:4044:1
position: 4044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4724:1
position: 4724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4044-4724:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ATP6
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 6
translation: MMTNLFSVFDPSTTIFNLSLNWLSTFLGLLIIPTSYWLMPNRFQVIWNNILITLHKEFKTLLGPNGHNGSTLMFISLFSLIMFNNFLGLFPYIFTSTSHLTLTLSLAFPLWLSFMLYGWISHTQHMFAHLVPQGTPPVLMPFMVCIETISNVIRPGTLAVRLTANMIAGHLLMTLLGNTGPMSTSYIILSLILVTQIALLVLESAVAIIQSYVFAVLSTLYSSEVN
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 4044..4724
location: region:4044-4724:1
so has part: feature:4044-4724:1:exon

YP_004221852.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4044-4724:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: COX3
so part of: sequence
location: 4724..5511
location: region:4724-5511:1
so has part: feature:4724-5511:1:exon
subclass of: SO_0000010

10200332
type: Gene
SIO_000068: ncbigene

position:5511:1
position: 5511
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4724-5511:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5510..5511,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit III
translation: MSTHANHPFHLVDYSPWPLTGAIGAMTTVTGLVQWFHQYDLTLFTLGNIITLMTMYQWWRDISREGTFQGLHTLPVTLGLRWGMILFIVSEIFFFISFFWAFFHSSLSPTIELGMTWPPVGIIAFNPFQIPLLNTAILLASGVTVTWAHHSLMENNHTQATQSLFFTVLLGIYFSILQGYEYIEASFTIADSVYGSTFFMATGFHGLHVLIGTSFLLVCLLRHINYHFSKSHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 4724..5511
location: region:4724-5511:1
so has part: feature:4724-5511:1:exon

YP_004221853.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4724-5511:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Gly
so part of: sequence
location: 5512..5578
location: region:5512-5578:1
so has part: feature:5512-5578:1:region

position:5512:1
position: 5512
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5578:1
position: 5578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5512-5578:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND3
so part of: sequence
location: 5576..5930
location: region:5576-5930:1
so has part: feature:5576-5930:1:exon
subclass of: SO_0000010

10200333
type: Gene
SIO_000068: ncbigene

position:5576:1
position: 5576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5930:1
position: 5930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5576-5930:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5930,aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MILILLIMSCIIFIITIVVMMLATFLSKKTIIDREKSSPFECGFDPMNYSRLPFSLRFFLIAIIFLIFDVEIALILPMILIIKSSNLLNWSITSLFFIFILLIGLYHEWNQGALEWNN
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 5576..5930
location: region:5576-5930:1
so has part: feature:5576-5930:1:exon

YP_004221854.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5576-5930:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Arg
so part of: sequence
location: 5931..5994
location: region:5931-5994:1
so has part: feature:5931-5994:1:region

position:5931:1
position: 5931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5994:1
position: 5994
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5931-5994:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Ala
so part of: sequence
location: 5995..6060
location: region:5995-6060:1
so has part: feature:5995-6060:1:region

position:5995:1
position: 5995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6060:1
position: 6060
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5995-6060:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Asn
so part of: sequence
location: 6061..6127
location: region:6061-6127:1
so has part: feature:6061-6127:1:region

position:6061:1
position: 6061
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6127:1
position: 6127
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6061-6127:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Ser
codon recognized: AGN
so part of: sequence
location: 6126..6190
location: region:6126-6190:1
so has part: feature:6126-6190:1:region

position:6126:1
position: 6126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6190:1
position: 6190
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6126-6190:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Glu
so part of: sequence
location: 6198..6263
location: region:6198-6263:1
so has part: feature:6198-6263:1:region

position:6198:1
position: 6198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6263:1
position: 6263
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6198-6263:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Phe
so part of: sequence
location: complement(6262..6328)
location: region:6262-6328:-1
so has part: feature:6262-6328:-1:region

position:6262:-1
position: 6262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6328:-1
position: 6328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6262-6328:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND5
so part of: sequence
location: complement(6329..8074)
location: region:6329-8074:-1
so has part: feature:6329-8074:-1:exon
subclass of: SO_0000010

10200334
type: Gene
SIO_000068: ncbigene

position:6329:-1
position: 6329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8074:-1
position: 8074
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6329-8074:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND5
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MVNNLVNYCKNSFYILIFISISLFFFSLKFLFNDLIYFIEWEIVSLHSMSIVMTFLFDWMSLMFMSFVLLISSLVIFYSNQYMAEDFNVNRFILLVLMFVMSMMMLIISPNLISILLGWDGLGLVSYCLVIYFQNVKSYNAGMLTALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMNKSFEMMIIGSLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNILLVDSFMGQFLLLISGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSIGFYKLAFFHLLTHALFKALLFMCAGVIIHNTKNAQDIRFMGSLSISMPLTCSCFNIANLALCGMPFLAGFYSKDLILEVVMLSYINFFSFFLFFFSTGLTVCYSFRLVYYSMTGDFNMTSLNMLNDKGWTMSFSIFFLMVMAIIGGSMLNWLMFFNPDMICLPFDMKMLTLIVCILGGVSGYLMSNISLFFYNKSLMNYGLSSFAGGMWFMPVISTLGVIKFSMNLGLYSYKSFDQGWSEFFGGQMLYNQLKNYSLYIQEFQNNNLKIYLLSYLLWVIVLVLMSMFLI
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(6329..8074)
location: region:6329-8074:-1
so has part: feature:6329-8074:-1:exon

YP_004221855.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6329-8074:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-His
so part of: sequence
location: complement(8072..8137)
location: region:8072-8137:-1
so has part: feature:8072-8137:-1:region

position:8072:-1
position: 8072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8137:-1
position: 8137
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8072-8137:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND4
so part of: sequence
location: complement(8138..9480)
location: region:8138-9480:-1
so has part: feature:8138-9480:-1:exon
subclass of: SO_0000010

10200335
type: Gene
SIO_000068: ncbigene

position:8138:-1
position: 8138
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9480:-1
position: 9480
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8138-9480:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(8138..8139),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLKFIFMILFMNVFMFYKNIYWMVQNLLFLGAFLFMIKISSMYYFCNISYYFGMDMVSYGLILLSFWICALMLMASESVVRLNNYTNLFLFMILFLLLMLILTFSSMSLFMFYLFFESSLIPTLFLILGWGYQPERLQAGVYLLFYTLLASLPLLIGIFYIKNNDFTMNIILLNYCKLYNLEFLYLCMVFAFLVKMPMFLVHLWLPKAHVEAPVSGSMILAGILLKLGGYGLLRVFSLLQIMGMKFNFIWISISLIGGVLVSLICLRQMDLKALIAYSSVAHMGIVLSGLLTMTYWGLSGSYTLMLAHGLCSSGLFCLANISYERMGSRSLLINKGMLNFMPSMALWWFLLCSGNMAAPPTLNLLGEISLLNSIVSWSWLTMISLALLSFFSAAYTLYLFAYSQHGKVYSGTYFFSSGVSREYLLLMLHWLPLNLLIMKSNFCMLWI
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(8138..9480)
location: region:8138-9480:-1
so has part: feature:8138-9480:-1:exon

YP_004221856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8138-9480:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND4L
so part of: sequence
location: complement(9474..9770)
location: region:9474-9770:-1
so has part: feature:9474-9770:-1:exon
subclass of: SO_0000010

10200336
type: Gene
SIO_000068: ncbigene

position:9474:-1
position: 9474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9770:-1
position: 9770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9474-9770:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MSNFLLYYFMIVMFMFGCIVFISTRKHLLCTLLSLEFMVLMLFMLLFFMLNFMNYEGYFSMFFLTFCVCEGVLGLSILVSMIRTHGNDYFQSFSILQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(9474..9770)
location: region:9474-9770:-1
so has part: feature:9474-9770:-1:exon

YP_004221857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9474-9770:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Thr
so part of: sequence
location: 9776..9840
location: region:9776-9840:1
so has part: feature:9776-9840:1:region

position:9776:1
position: 9776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9840:1
position: 9840
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9776-9840:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Pro
so part of: sequence
location: complement(9841..9906)
location: region:9841-9906:-1
so has part: feature:9841-9906:-1:region

position:9841:-1
position: 9841
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9906:-1
position: 9906
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9841-9906:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND6
so part of: sequence
location: 9912..10427
location: region:9912-10427:1
so has part: feature:9912-10427:1:exon
subclass of: SO_0000010

10200337
type: Gene
SIO_000068: ncbigene

position:9912:1
position: 9912
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10427:1
position: 10427
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9912-10427:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MMIMFLCFITSFIFMQMKHPLAMGLMLLIQTFLTCLMTGIYAKTFWFSYVLFLIFMGGMLVLFIYVTSLSSNEMFSMSFKLSFISIMMIFLFIMISYFFDNSMMENFIKNNDSIQLFNQNNLFYENFLSLNKMYNFPTNLITLLLINYLFLTLLVTVKITKKNYGPLRPMN
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 9912..10427
location: region:9912-10427:1
so has part: feature:9912-10427:1:exon

YP_004221858.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9912-10427:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: CYTB
so part of: sequence
location: 10427..11561
location: region:10427-11561:1
so has part: feature:10427-11561:1:exon
subclass of: SO_0000010

10200338
type: Gene
SIO_000068: ncbigene

position:11561:1
position: 11561
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10427-11561:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: CYTB
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11561,aa:TERM)
transl table: 5
product: cytochrome b
translation: MNKPLRKSHPLISIANNALVDLPAPSNISAWWNFGSLLGLCLVIQILTGLFLAMHYTADIETAFDSVNHIYRDVNNGWFLRICHANGASFFFACLFTHVGRGVYYNSYLYVPTWMIGVIILFMVMATGFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFAVDNATLTRFFTFHFVLPFIIAALTMIHLLFLHQTGSNNPLGLNSNVDKIPFHPYFIYKDVMGFIIFIWILIGFIWKFNYLLMDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFTHTSKFRGLQFYPLNQILFWNMVIIASLLTWIGARPVEDPYVLTGQILTVLYFSYFLINPLLSKYWDKLLN
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 10427..11561
location: region:10427-11561:1
so has part: feature:10427-11561:1:exon

YP_004221859.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10427-11561:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: 11562..11627
location: region:11562-11627:1
so has part: feature:11562-11627:1:region

position:11562:1
position: 11562
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11627:1
position: 11627
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11562-11627:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 38569
gene: ND1
so part of: sequence
location: complement(11646..12602)
location: region:11646-12602:-1
so has part: feature:11646-12602:-1:exon
subclass of: SO_0000010

10200339
type: Gene
SIO_000068: ncbigene

position:11646:-1
position: 11646
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12602:-1
position: 12602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11646-12602:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 38569
gene: ND1
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MVLFYMDLLLSLIGSLLLVICVMVGVAFLTLLERKVLGYIQIRKGPNKVGFMGLLQPFSDAVKLFTKEQTYPLLSNYIFYYFSPIFSLFLSLLIWMCIPYLIKLYSFNLGVLFFLCITSLGVYTVMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGDYNFLNFYLFQKYTWFILFCFPLGLVWFASCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFSVMFLGSDIYSLLFFFKLTMISFLFIWVRGTLPRFRYDKLMYLAWKSFLPMSLNYLFFFIGVKLGVLSLLF
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(11646..12602)
location: region:11646-12602:-1
so has part: feature:11646-12602:-1:exon

YP_004221860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11646-12602:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: complement(12599..12663)
location: region:12599-12663:-1
so has part: feature:12599-12663:-1:region

position:12599:-1
position: 12599
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12663:-1
position: 12663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12599-12663:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 38569
product: l-rRNA
note: l-rRNA; 16S ribosomal RNA
so part of: sequence
location: complement(12667..13999)
location: region:12667-13999:-1
so has part: feature:12667-13999:-1:region

position:12667:-1
position: 12667
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13999:-1
position: 13999
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12667-13999:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 38569
product: tRNA-Val
so part of: sequence
location: complement(14000..14071)
location: region:14000-14071:-1
so has part: feature:14000-14071:-1:region

position:14000:-1
position: 14000
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14071:-1
position: 14071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14000-14071:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 38569
product: s-rRNA
note: s-rRNA; 12S ribosomal RNA
so part of: sequence
location: complement(14072..14856)
location: region:14072-14856:-1
so has part: feature:14072-14856:-1:region

position:14072:-1
position: 14072
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14856:-1
position: 14856
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14072-14856:-1:region