Hippeastrum mosaic virus, complete genome.
type: Entry
definition: Hippeastrum mosaic virus, complete genome.
sequence version: NC_017967.1
sequence date: 2018-08-13
sequence: sequence
division: VRL
label: NC_017967.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA485481
keyword: RefSeq
source: Hippeastrum mosaic virus (HiMV)
organism: Hippeastrum mosaic virus
taxonomy: Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus.
reference: 1
references: 22569885
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to JQ395040.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000353
sequence length: 9660
topology: linear
so has quality: SO_0000987
location: 1..9660
location: region:1-9660:1
RO_0002162: 421010

NC_017967
type: RefSeq
SIO_000068: refseq

PRJNA485481
type: BioProject
SIO_000068: bioproject

1
title: Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming
author: Wylie, S.J.
author: Jones, M.G.
journal: Arch. Virol.
volume: 157
issue: 8
pages: 1471-1480
year: 2012
pubmed: 22569885

22569885
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (25-MAY-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Wylie, S.J.
author: Jones, M.G.K.
journal: Submitted (10-JAN-2012) Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch University, South Street, Perth, WA 6150, Australia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9660:1
position: 9660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9660:1:source
so part of: sequence
organism: Hippeastrum mosaic virus
mol type: genomic RNA
isolate: Marijiniup 1
host: Hippeastrum sp.
country: Australia
collection date: 01-Aug-2011
collected by: S. Wylie

421010
type: Taxonomy
SIO_000068: taxonomy

5'UTR
type: Five Prime UTR
subclass of: SO_0000204
RO_0002162: 421010
so part of: sequence
location: 1..110
location: region:1-110:1
so has part: feature:1-110:1:region

position:110:1
position: 110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-110:1:region

A328_gp1
type: Gene
subclass of: SO_0000704
RO_0002162: 421010
locus tag: A328_gp1
so part of: sequence
location: 111..9581
location: region:111-9581:1
so has part: feature:111-9581:1:exon
subclass of: SO_0000010

12978528
type: Gene
SIO_000068: ncbigene

position:111:1
position: 111
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9581:1
position: 9581
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111-9581:1:exon

A328_gp1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 421010
locus tag: A328_gp1
codon start: 1
product: polyprotein
translation: MASMMMIGSINIDLGNWKVDTGMSKVSSVAARPNLNSANLSKTLLNDRDGVESTTIKTIEKPKISDLFVDCVPVVVPKSVKDDWLLSDSLFAQMRKYIKFTAEGRRILYKGWESFAHNMERFAYTYTRKMKEAAIGRLNKTFDAPDEVINSIRIEEEDVKAVDTTVKPREQVQRKVRAKPKKNYVTWSVEKLINSVRTVSESTGVEIQVIGKRANRPLCLRGVRRYGTKCFKVTTRHECGIYKPVDCYFDEVQRPVFEQLMRPYERRRTIQSKMLTYGDSGLVLSKKEALGGICHEDEVFFIVRGRLLGNLVDAREPLNFESQIAVDHYNDVAKEFWDGYSSTFVEHKNQIDDHVCERDVSVYECGKVAAFLTLIYGQCGKITCGKCAKRVAEMSLGEYSDAVLKEMERLSPFMSKSLASFEHVQQFVDVTKNIASHSKMNYDAFTENIRLIGDRSDAPYSHLLNLNNGIVKLLHSSDGDATRLAEELRQLVRWHKNRIEHVKTGSLATFRNKILAKNQLNLSLLCDNQRDQNGNFVWGLRGAAVNRFFKNYFTEVVVGGKYEQYQVRHNPRGSRQLAIGHLVMPTDLAVLRGQLKGERIDQGPVGENCISRLHGNFLNPCCCVTHDNGVAYESAYMAPTKHHLVVGSPIDPKYIDLPQGKKPGMYIPKEGYCYILIFIAMLLNVEEEKAKQFTKIVRDVLVPKLGTWPKMIDVATACHFLSILHPDTRTAEIPRILVDHQKQILHVIDSYGSATSGFHYLKAGTVAQLILFANDDLQSEIKDYLVGGEKDVTISVQNRRSGCKPQKSLTVLEKMPENHFVKEVTFEVGESSTSQQQRNKGCGSNEERSYPCLNQPLASATNTIWEHMKFLIRAIHRPQKMRQILEDEPFLLLLGILSPAIIKALFESGTFSDGLSIWINRDSSVAHMLAILDDLAVKTTRSDMFWEQLRILEEGYKPLREKLSERRYPSASYGMAFTAISLAHDRIVADKELNQAGFYASGAKIASYLEKNYTDELAISWSELSLCGKLRVMKHTCMRKLRSPDYLQGDKQRIKEWKEASGSCLERCSKTINASVAVAIYHTKRFCKNVLWKSNQALVHIPLKILQGGLPQLFKHVSMLAVLSLLIAIIHNVTSMVNEHKRMKREAQSIAYNKREKQLGRIFELFIAKHGTELSESQWEDFEKSVPDELKTHYREEWCGERSVTYQSKSKQEHIFEQIIGFLLLATLMFSPARSDVVFKVLNKVKSILTSTAPDCRFQSLDTIDDILESKQQVVDVELSTNAAFVETPFDSTFEKWWDNQMQVGNTIPHYRTGGFFMEFKRNWAPKFCSDVINSDEKEFLISGAVGSGKSTGLPFNLSQKGRILVLEPTRPLAENVCAQLRKHPFFCSPSLFMRNVHTVGHSPIDVMTSGFALHSLANKREKIFDYQFIMFDECHVLDSSAMAFYCLLQEVKFPGKILKVSATPPGHECEFETQHPVEVIREASLTFTQFAQNLGTGAYSDVLKKGVNILVYVASYNDVDSLSKLLIEKQFMVTKIDGRTLKSGTNEIATRGTKEKPHFLVATNIIENGVTLDIDVVVDFGTKVVAQLDSDSRRITYSKTNISYGERIQRLGRVGRNKPGTALRLGHTEMGLSEIPVNIATEAAFLSFAYNLPVMTHNVSTSLLGKCTKRQAITALQFELPIYYTSSLIASNGSMHPEIHEVLKPYKLRYSRVEMHELSFQMGHTAQWLTVRDYSKLGVDVQCEPEMKLAFYARDVPERLHEKIWRIVCDLKTNSTRCSIRSHNASKIAYTLRTDPTAVQTSIAIIDQLLEEEQLKQSYMQSLSLMSSSASFISWSSMINAVRSRYAVDHTGENIEKLQRVKARLTEFNNITRTGNYHEAVTEFMEAEAVHYQNKNDMSKFVGLKGKWDSSLLTRDLIVCSVVLVGGIWLTYEHLLRGHQEDVTYQGKGNAARAKQLKMRANRDKRTYRIDAPEEALEQFFGEAYTKHGKKSGKSKTHG…
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 111..9581
location: region:111-9581:1
so has part: feature:111-9581:1:exon

YP_006382256.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:111-9581:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: P1
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 111..1100
location: region:111-1100:1
so has part: feature:111-1100:1:exon

YP_006390057.1
type: Protein
SIO_000068: ncbiprotein

position:1100:1
position: 1100
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111-1100:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: HC-Pro
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 1101..2471
location: region:1101-2471:1
so has part: feature:1101-2471:1:exon

YP_006390058.1
type: Protein
SIO_000068: ncbiprotein

position:1101:1
position: 1101
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2471:1
position: 2471
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1101-2471:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: P3
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 2472..3731
location: region:2472-3731:1
so has part: feature:2472-3731:1:exon

YP_006390059.1
type: Protein
SIO_000068: ncbiprotein

position:2472:1
position: 2472
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3731:1
position: 3731
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2472-3731:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: 6K1
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 3732..3887
location: region:3732-3887:1
so has part: feature:3732-3887:1:exon

YP_006390060.1
type: Protein
SIO_000068: ncbiprotein

position:3732:1
position: 3732
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3887:1
position: 3887
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3732-3887:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: CI
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 3888..5792
location: region:3888-5792:1
so has part: feature:3888-5792:1:exon

YP_006390061.1
type: Protein
SIO_000068: ncbiprotein

position:3888:1
position: 3888
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5792:1
position: 5792
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3888-5792:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: 6K2
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 5793..5951
location: region:5793-5951:1
so has part: feature:5793-5951:1:exon

YP_006390062.1
type: Protein
SIO_000068: ncbiprotein

position:5793:1
position: 5793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5951:1
position: 5951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5793-5951:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: VPg
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 5952..6527
location: region:5952-6527:1
so has part: feature:5952-6527:1:exon

YP_006390063.1
type: Protein
SIO_000068: ncbiprotein

position:5952:1
position: 5952
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6527:1
position: 6527
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5952-6527:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: Nia-Pro
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 6528..7256
location: region:6528-7256:1
so has part: feature:6528-7256:1:exon

YP_006390064.1
type: Protein
SIO_000068: ncbiprotein

position:6528:1
position: 6528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7256:1
position: 7256
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6528-7256:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: NIb
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 7257..8816
location: region:7257-8816:1
so has part: feature:7257-8816:1:exon

YP_006390065.1
type: Protein
SIO_000068: ncbiprotein

position:7257:1
position: 7257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8816:1
position: 8816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7257-8816:1:exon

A328_gp1
type: Mature Peptide
subclass of: SO_0000419
RO_0002162: 421010
locus tag: A328_gp1
product: CP
SIO_010081: A328_gp1
subclass of: SO_0000673
so part of: A328_gp1
location: 8817..9578
location: region:8817-9578:1
so has part: feature:8817-9578:1:exon

YP_006390066.1
type: Protein
SIO_000068: ncbiprotein

position:8817:1
position: 8817
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9578:1
position: 9578
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8817-9578:1:exon

A328_gp2
type: Gene
subclass of: SO_0000704
RO_0002162: 421010
locus tag: A328_gp2
so part of: sequence
location: <3143..3361
location: region:3143-3361:1
so has part: feature:3143-3361:1:exon
subclass of: SO_0000010

13036846
type: Gene
SIO_000068: ncbigene

position:3143:1
position: 3143
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:3361:1
position: 3361
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3143-3361:1:exon

A328_gp2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 421010
locus tag: A328_gp2
codon start: 1
product: PIPO
translation: KLHRRVGHLLERAKFVWKIARNETHLHAKAQISRLSSRGQAKNKRVERSLRFLLGTMFQNHQCECGCSYIPH
SIO_010081: A328_gp2
subclass of: SO_0000673
so part of: A328_gp2
location: <3143..3361
location: region:3143-3361:1
so has part: feature:3143-3361:1:exon

YP_006438186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3143-3361:1:exon

3'UTR
type: Three Prime UTR
subclass of: SO_0000205
RO_0002162: 421010
so part of: sequence
location: 9582..9660
location: region:9582-9660:1
so has part: feature:9582-9660:1:region

position:9582:1
position: 9582
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9582-9660:1:region