Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence.
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilaceae; Methylibium.
Whole-genome analysis of the methyl tert-butyl ether-degrading beta-proteobacterium Methylibium petroleiphilum PM1
Whole-Genome Analysis of Methyl tert-Butyl Ether (MTBE)-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1
Submitted (19-JAN-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP000556.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 3436553\nSource DNA and bacteria available from Staci Kane (kane11@llnl.gov)\nContacts: Staci Kane (kane11@llnl.gov)\n Krassimira R. Hristova (krhristova@ucdavis.edu)\n Paul Richardson (microbes@cuba.jgi-psf.org)\nQuality assurance done by JGI-Stanford\nAnnotation done by JGI-ORNL,JGI-PGF and JGI-LLNL\nFinishing done by JGI-LLNL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/04/2022 12:36:30\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,606\nCDSs (total) :: 4,531\nGenes (coding) :: 4,452\nCDSs (with protein) :: 4,452\nGenes (RNA) :: 75\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 68\nncRNAs :: 4\nPseudo Genes (total) :: 79\nCDSs (without protein) :: 79\nPseudo Genes (ambiguous residues) :: 0 of 79\nPseudo Genes (frameshifted) :: 11 of 79\nPseudo Genes (incomplete) :: 68 of 79\nPseudo Genes (internal stop) :: 5 of 79\nPseudo Genes (multiple problems) :: 5 of 79\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylibium petroleiphilum
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_076611664.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISMpe1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005369928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013541217.1
GO:0006303 - double-strand break repair via nonhomologous end joining [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014263499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012346938.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012363262.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011285775.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014433399.1
GO:0015074 - DNA integration [Evidence IEA]
phage integrase N-terminal SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000594369.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024783.2
COORDINATES: similar to AA sequence:RefSeq:WP_014427327.1
glycine zipper domain-containing protein
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: similar to AA sequence:RefSeq:WP_013902255.1
COORDINATES: similar to AA sequence:RefSeq:WP_005794644.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011486202.1
COORDINATES: similar to AA sequence:RefSeq:WP_010335905.1
COORDINATES: similar to AA sequence:RefSeq:WP_020228515.1
COORDINATES: protein motif:HMM:NF017736.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF033890.1
type IVB secretion system coupling complex protein DotM/IcmP
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF019442.2
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF024206.2
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011831781.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: protein motif:HMM:NF023898.2
COORDINATES: similar to AA sequence:RefSeq:WP_015866132.1
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: protein motif:HMM:NF020125.2
COORDINATES: protein motif:HMM:NF020252.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194189.1
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03033.1
COORDINATES: similar to AA sequence:RefSeq:WP_019590528.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033859.1
COORDINATES: similar to AA sequence:RefSeq:WP_013300248.1
COORDINATES: protein motif:HMM:NF023508.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194206.1
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: similar to AA sequence:RefSeq:WP_020723062.1
COORDINATES: similar to AA sequence:RefSeq:WP_011345715.1
COORDINATES: similar to AA sequence:RefSeq:WP_019937215.1
COORDINATES: similar to AA sequence:RefSeq:WP_019937216.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011830247.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF012524.2
GO:0004799 - thymidylate synthase activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014505.2
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_011831547.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004636613.1
COORDINATES: similar to AA sequence:RefSeq:WP_000985727.1
COORDINATES: similar to AA sequence:RefSeq:WP_018915100.1
COORDINATES: similar to AA sequence:RefSeq:WP_018915099.1
COORDINATES: similar to AA sequence:RefSeq:WP_000134740.1
phosphoadenosine phosphosulfate reductase family protein
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_011798109.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011798108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007835846.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_014895639.1
DNA phosphorothioation-associated putative methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011830565.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012327549.1
COORDINATES: similar to AA sequence:RefSeq:WP_008453169.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830562.1
COORDINATES: similar to AA sequence:RefSeq:WP_011830561.1
COORDINATES: protein motif:HMM:NF015736.2
DnaB-like helicase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014426911.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005386569.1
COORDINATES: similar to AA sequence:RefSeq:WP_009517930.1
COORDINATES: protein motif:HMM:NF024363.2
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_005404166.1
COORDINATES: similar to AA sequence:RefSeq:WP_017479571.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876195.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015912646.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012413.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194274.1
COORDINATES: similar to AA sequence:RefSeq:WP_009549940.1
COORDINATES: protein motif:HMM:NF012314.2
COORDINATES: protein motif:HMM:NF014759.2
COORDINATES: similar to AA sequence:RefSeq:WP_018992357.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF001463.0
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: protein motif:HMM:NF006452.0
crotonase/enoyl-CoA hydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011827840.1
COORDINATES: protein motif:HMM:NF014244.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011583125.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876345.1
COORDINATES: similar to AA sequence:RefSeq:WP_013982118.1
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008265056.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013691926.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201357.1
COORDINATES: similar to AA sequence:RefSeq:WP_012663875.1
GO:0004170 - dUTP diphosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006226 - dUMP biosynthetic process [Evidence IEA]; GO:0046081 - dUTP catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025577.2
COORDINATES: similar to AA sequence:RefSeq:WP_004630456.1
COORDINATES: similar to AA sequence:RefSeq:WP_015992563.1
COORDINATES: similar to AA sequence:RefSeq:WP_019654683.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_019025297.1
COORDINATES: protein motif:HMM:NF024922.2
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_007831211.1
COORDINATES: protein motif:HMM:NF014752.2
helix-hairpin-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013593.2
COORDINATES: similar to AA sequence:RefSeq:WP_013012852.1
COORDINATES: similar to AA sequence:RefSeq:WP_011828107.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786579.1
COORDINATES: protein motif:HMM:NF024977.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488636.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229317.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018693.2
COORDINATES: similar to AA sequence:RefSeq:WP_019659222.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012076829.1
COORDINATES: protein motif:HMM:NF024606.2
TerB N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025085.2
COORDINATES: similar to AA sequence:RefSeq:WP_020831027.1
COORDINATES: similar to AA sequence:RefSeq:WP_011486259.1
COORDINATES: similar to AA sequence:RefSeq:WP_019462445.1
COORDINATES: similar to AA sequence:RefSeq:WP_002942075.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013519923.1
COORDINATES: protein motif:HMM:NF012200.0
choice-of-anchor D domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876026.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_011229374.1
COORDINATES: similar to AA sequence:RefSeq:WP_014194378.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_009857892.1
COORDINATES: protein motif:HMM:TIGR00665.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: similar to AA sequence:RefSeq:WP_019334794.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_011876142.1
type IV conjugative transfer system protein TraL
COORDINATES: protein motif:HMM:NF017152.2
type IV conjugative transfer system protein TraE
COORDINATES: protein motif:HMM:NF018311.2
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_019334800.1
COORDINATES: protein motif:HMM:NF036774.2
COORDINATES: protein motif:HMM:NF021212.2
COORDINATES: similar to AA sequence:RefSeq:WP_019334801.1
TraA family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011876136.1
COORDINATES: protein motif:HMM:NF021213.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194412.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019334805.1
COORDINATES: similar to AA sequence:RefSeq:WP_019334806.1
COORDINATES: protein motif:HMM:NF019530.2
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020190100.1
thiol:disulfide interchange protein DsbA/DsbL
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_017453256.1
COORDINATES: protein motif:HMM:NF019843.2
COORDINATES: protein motif:HMM:NF009019.0
COORDINATES: similar to AA sequence:RefSeq:WP_018007794.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_014194420.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876113.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876112.1
COORDINATES: similar to AA sequence:RefSeq:WP_011229377.1
COORDINATES: similar to AA sequence:RefSeq:WP_004574788.1
COORDINATES: similar to AA sequence:RefSeq:WP_019334824.1
COORDINATES: similar to AA sequence:RefSeq:WP_011876105.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF037707.2
COORDINATES: similar to AA sequence:RefSeq:WP_014194430.1
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011830741.1
COORDINATES: similar to AA sequence:RefSeq:WP_012478196.1
COORDINATES: similar to AA sequence:RefSeq:WP_011312813.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate metabolism transcriptional regulator PhnF
COORDINATES: similar to AA sequence:RefSeq:WP_008163972.1
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008248407.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008248399.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005887 - integral component of plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: protein motif:HMM:TIGR03293.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: protein motif:HMM:NF017645.2
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_003118412.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_003118411.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_011783453.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011783356.1
GO:0018835 - carbon phosphorus lyase activity [Evidence IEA]
phosphonate C-P lyase system protein PhnL
COORDINATES: similar to AA sequence:RefSeq:WP_003118407.1
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_003118406.1
GO:0003674 - molecular_function [Evidence IEA]
phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN
COORDINATES: similar to AA sequence:RefSeq:WP_011785761.1
GO:0008081 - phosphoric diester hydrolase activity [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011783448.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF012392.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013966697.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_008374405.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008906454.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019572678.1
COORDINATES: similar to AA sequence:RefSeq:WP_004306978.1
COORDINATES: similar to AA sequence:RefSeq:WP_017365394.1
cobalt-precorrin-5B (C(1))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013592607.1
bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013592608.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013592609.1
COORDINATES: similar to AA sequence:RefSeq:WP_011287439.1
COORDINATES: similar to AA sequence:RefSeq:WP_012248397.1
COORDINATES: similar to AA sequence:RefSeq:WP_007872086.1
COORDINATES: similar to AA sequence:RefSeq:WP_012746163.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF012235.2
COORDINATES: similar to AA sequence:RefSeq:WP_011483680.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: protein motif:HMM:NF004790.0
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_017677467.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611973.1
COORDINATES: similar to AA sequence:RefSeq:WP_003459923.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF019845.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013674241.1
COORDINATES: similar to AA sequence:RefSeq:WP_006594419.1
COORDINATES: protein motif:HMM:NF011660.0
GO:0005515 - protein binding [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015747610.1
COORDINATES: similar to AA sequence:RefSeq:WP_015747611.1
ethanolamine utilization microcompartment protein EutM
COORDINATES: similar to AA sequence:RefSeq:WP_006594410.1
EutN/CcmL family microcompartment protein
COORDINATES: similar to AA sequence:RefSeq:WP_011831853.1
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:NF004531.0
COORDINATES: similar to AA sequence:RefSeq:WP_001183618.1
COORDINATES: similar to AA sequence:RefSeq:WP_009855957.1
COORDINATES: similar to AA sequence:RefSeq:WP_011464908.1
COORDINATES: similar to AA sequence:RefSeq:WP_007872106.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012347685.1
COORDINATES: similar to AA sequence:RefSeq:WP_011801748.1
COORDINATES: similar to AA sequence:RefSeq:WP_013900965.1
COORDINATES: similar to AA sequence:RefSeq:WP_007860962.1
GO:0008817 - cob(I)yrinic acid a,c-diamide adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011806302.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_011464899.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_012747674.1
COORDINATES: similar to AA sequence:RefSeq:WP_017406548.1
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019559616.1
GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: similar to AA sequence:RefSeq:WP_011829894.1
COORDINATES: protein motif:HMM:NF024952.2
COORDINATES: similar to AA sequence:RefSeq:WP_011734971.1
COORDINATES: similar to AA sequence:RefSeq:WP_011000070.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558343.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611824.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011831828.1
COORDINATES: protein motif:HMM:NF012609.2
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024883.2
COORDINATES: similar to AA sequence:RefSeq:WP_019198710.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993120.1
cobalamin B12-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013167564.1
COORDINATES: similar to AA sequence:RefSeq:WP_013167563.1
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: similar to AA sequence:RefSeq:WP_008838246.1
COORDINATES: protein motif:HMM:TIGR00636.1
COORDINATES: similar to AA sequence:RefSeq:WP_009028013.1
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: similar to AA sequence:RefSeq:WP_006157555.1
COORDINATES: similar to AA sequence:RefSeq:WP_014249902.1
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF024744.2
COORDINATES: similar to AA sequence:RefSeq:WP_018440115.1
COORDINATES: similar to AA sequence:RefSeq:WP_006395783.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_041645937.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: similar to AA sequence:RefSeq:WP_002639074.1
COORDINATES: similar to AA sequence:RefSeq:WP_007854323.1
COORDINATES: similar to AA sequence:RefSeq:WP_013902842.1
COORDINATES: similar to AA sequence:RefSeq:WP_010462872.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010927356.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_013902839.1
COORDINATES: similar to AA sequence:RefSeq:WP_019560193.1
COORDINATES: similar to AA sequence:RefSeq:WP_008064273.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017667256.1
COORDINATES: similar to AA sequence:RefSeq:WP_011827983.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011827983.1,RefSeq:WP_015014857.1
COORDINATES: similar to AA sequence:RefSeq:WP_011085722.1
COORDINATES: protein motif:HMM:NF024966.2
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009550574.1
COORDINATES: similar to AA sequence:RefSeq:WP_011827997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011831904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011827999.1
photosystem II stability/assembly factor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_011828489.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417442.1
COORDINATES: similar to AA sequence:RefSeq:WP_011828488.1
COORDINATES: similar to AA sequence:RefSeq:WP_009942309.1
COORDINATES: protein motif:HMM:NF037660.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019663698.1
COORDINATES: similar to AA sequence:RefSeq:WP_005140455.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: similar to AA sequence:RefSeq:WP_015486581.1
COORDINATES: similar to AA sequence:RefSeq:WP_008138648.1
COORDINATES: similar to AA sequence:RefSeq:WP_011827996.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019702973.1
COORDINATES: similar to AA sequence:RefSeq:WP_009156899.1
COORDINATES: similar to AA sequence:RefSeq:WP_004549469.1
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014427990.1
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: protein motif:HMM:NF033429.2
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_019702945.1
COORDINATES: similar to AA sequence:RefSeq:WP_015867302.1
COORDINATES: similar to AA sequence:RefSeq:WP_011798343.1
COORDINATES: protein motif:HMM:NF023701.2
nucleotidyltransferase domain-containing protein