Burkholderia plantarii strain ATCC 43733 plasmid bpln_1p, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.
Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts
Submitted (14-FEB-2014) Agricultural Biotechnology, Seoul National University, Department of Agricultural Biotechnology, Seoul National University, Seoul 151-921, Republic of Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP007214.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 19:44:08\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 7,063\nCDSs (total) :: 6,982\nGenes (coding) :: 6,820\nCDSs (with protein) :: 6,820\nGenes (RNA) :: 81\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 162\nCDSs (without protein) :: 162\nPseudo Genes (ambiguous residues) :: 0 of 162\nPseudo Genes (frameshifted) :: 66 of 162\nPseudo Genes (incomplete) :: 130 of 162\nPseudo Genes (internal stop) :: 29 of 162\nPseudo Genes (multiple problems) :: 55 of 162\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017424107.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012732802.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_013699799.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732804.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017424105.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424104.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735268.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691740.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732809.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735271.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735272.1
protein-disulfide reductase DsbD N-terminal domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012732812.1
GO:0019867 - outer membrane [Evidence IEA]
outer membrane protein assembly factor BamE
COORDINATES: similar to AA sequence:RefSeq:WP_012732813.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735273.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735274.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732818.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732819.1
COORDINATES: similar to AA sequence:RefSeq:WP_013436714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732821.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732822.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735283.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732824.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_011695074.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_012732826.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_012732827.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012735289.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735290.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732830.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_012732831.1
COORDINATES: similar to AA sequence:RefSeq:WP_015967374.1
COORDINATES: similar to AA sequence:RefSeq:WP_015876065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695064.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732833.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732834.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732835.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_012735294.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_012732837.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_012735295.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735296.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695057.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732842.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732844.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732845.1
carbon-nitrogen hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732846.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877382.1
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017423246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011038220.1
COORDINATES: protein motif:HMM:NF016255.2
COORDINATES: similar to AA sequence:RefSeq:WP_012732851.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732852.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012732853.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732854.1
COORDINATES: protein motif:HMM:NF023926.2
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012735304.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699825.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956326.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735308.1
COORDINATES: similar to AA sequence:RefSeq:WP_013699828.1
COORDINATES: similar to AA sequence:RefSeq:WP_017424812.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732861.1
COORDINATES: similar to AA sequence:RefSeq:WP_015876349.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735310.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735311.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012336742.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018381.2
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_020379729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691802.1
COORDINATES: protein motif:HMM:NF024420.2
COORDINATES: similar to AA sequence:RefSeq:WP_013691816.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012492245.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691491.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691492.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011879998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013343496.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691449.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013691818.1
GO:0051782 - negative regulation of cell division [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
translesion DNA synthesis-associated protein ImuA
COORDINATES: similar to AA sequence:RefSeq:WP_012211068.1
COORDINATES: similar to AA sequence:RefSeq:WP_012735330.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402534.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015233.2
COORDINATES: similar to AA sequence:RefSeq:WP_007917405.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017423524.1
COORDINATES: similar to AA sequence:RefSeq:WP_006402546.1
COORDINATES: similar to AA sequence:RefSeq:WP_012734093.1
COORDINATES: similar to AA sequence:RefSeq:WP_012354511.1
COORDINATES: similar to AA sequence:RefSeq:WP_006029257.1
COORDINATES: similar to AA sequence:RefSeq:WP_017333784.1
COORDINATES: similar to AA sequence:RefSeq:WP_017425513.1
COORDINATES: similar to AA sequence:RefSeq:WP_011544710.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012733955.1
COORDINATES: similar to AA sequence:RefSeq:WP_011325508.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013689531.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689530.1
COORDINATES: similar to AA sequence:RefSeq:WP_012385568.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612183.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012732717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877959.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015877958.1
COORDINATES: similar to AA sequence:RefSeq:WP_017423832.1
COORDINATES: similar to AA sequence:RefSeq:WP_015877956.1
COORDINATES: similar to AA sequence:RefSeq:WP_011546517.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732726.1
COORDINATES: similar to AA sequence:RefSeq:WP_013690793.1
COORDINATES: similar to AA sequence:RefSeq:WP_011059747.1
COORDINATES: similar to AA sequence:RefSeq:WP_015875545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015875544.1
COORDINATES: similar to AA sequence:RefSeq:WP_004533799.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025054.2
COORDINATES: similar to AA sequence:RefSeq:WP_017333771.1
COORDINATES: protein motif:HMM:NF017528.2
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_007178953.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611183.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021509.2
COORDINATES: protein motif:HMM:NF012339.2
COORDINATES: similar to AA sequence:RefSeq:WP_086558218.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005261525.1
COORDINATES: similar to AA sequence:RefSeq:WP_007747045.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487217.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519947.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011519949.1
aromatic ring-hydroxylating dioxygenase subunit alpha
COORDINATES: protein motif:HMM:NF012422.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF024996.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011487221.1
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008972330.1
COORDINATES: similar to AA sequence:RefSeq:WP_012109904.1
COORDINATES: similar to AA sequence:RefSeq:WP_011487220.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490981.1
COORDINATES: similar to AA sequence:RefSeq:WP_011490980.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_011487216.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012733856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012733855.1
COORDINATES: similar to AA sequence:RefSeq:WP_013689058.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700126.1
COORDINATES: similar to AA sequence:RefSeq:WP_012588910.1
COORDINATES: similar to AA sequence:RefSeq:WP_004882455.1
COORDINATES: similar to AA sequence:RefSeq:WP_005920205.1
COORDINATES: similar to AA sequence:RefSeq:WP_003490939.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010034315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013700073.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732710.1
COORDINATES: similar to AA sequence:RefSeq:WP_006482412.1
COORDINATES: similar to AA sequence:RefSeq:WP_020071107.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691837.1
COORDINATES: similar to AA sequence:RefSeq:WP_011695142.1
COORDINATES: similar to AA sequence:RefSeq:WP_012732709.1
COORDINATES: similar to AA sequence:RefSeq:WP_018417957.1