Methylobacterium phyllosphaerae strain CBMB27 plasmid CBMB27-p3, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Complete genome sequencing and analysis of CBMB27, Methylobacterium phyllosphaerae isolated from leaf tissues of rice (Oryza sativa L.)
Submitted (23-APR-2016) Department of Industrial Plant Science and technology, Chungbuk National University, Seongbon-ro 410, Cheongju, Chungbuk 361-763, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP015370.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. 2.3.0\nGenome Coverage :: 182.47\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:40:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,844\nCDSs (total) :: 5,768\nGenes (coding) :: 5,663\nCDSs (with protein) :: 5,663\nGenes (RNA) :: 76\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 5\nPseudo Genes (total) :: 105\nCDSs (without protein) :: 105\nPseudo Genes (ambiguous residues) :: 0 of 105\nPseudo Genes (frameshifted) :: 43 of 105\nPseudo Genes (incomplete) :: 69 of 105\nPseudo Genes (internal stop) :: 18 of 105\nPseudo Genes (multiple problems) :: 23 of 105\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylobacterium phyllosphaerae
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005790314.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013010071.1
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_012340187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340185.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340184.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340183.1
COORDINATES: similar to AA sequence:RefSeq:WP_011950815.1
COORDINATES: similar to AA sequence:RefSeq:WP_003606573.1
COORDINATES: protein motif:HMM:NF024565.2
COORDINATES: similar to AA sequence:RefSeq:WP_012457147.1
COORDINATES: similar to AA sequence:RefSeq:WP_007558556.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340145.1
COORDINATES: similar to AA sequence:RefSeq:WP_012319064.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019906523.1
GO:0004673 - protein histidine kinase activity [Evidence IEA]
HWE histidine kinase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007559353.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568017.1
COORDINATES: similar to AA sequence:RefSeq:WP_003602778.1
COORDINATES: similar to AA sequence:RefSeq:WP_018042900.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612353.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009867220.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012493951.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321731.1
chemotaxis response regulator protein-glutamate methylesterase
COORDINATES: similar to AA sequence:RefSeq:WP_012321730.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012321729.1
GO:0006935 - chemotaxis [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012329517.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020091068.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091069.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091070.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321724.1
COORDINATES: similar to AA sequence:RefSeq:WP_008142319.1