Methylobacterium phyllosphaerae strain CBMB27 plasmid CBMB27-p2, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium.
Complete genome sequencing and analysis of CBMB27, Methylobacterium phyllosphaerae isolated from leaf tissues of rice (Oryza sativa L.)
Submitted (23-APR-2016) Department of Industrial Plant Science and technology, Chungbuk National University, Seongbon-ro 410, Cheongju, Chungbuk 361-763, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP015369.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLC NGS Cell v. 2.3.0\nGenome Coverage :: 182.47\nSequencing Technology :: PacBio; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 03:40:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,844\nCDSs (total) :: 5,768\nGenes (coding) :: 5,663\nCDSs (with protein) :: 5,663\nGenes (RNA) :: 76\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 5\nPseudo Genes (total) :: 105\nCDSs (without protein) :: 105\nPseudo Genes (ambiguous residues) :: 0 of 105\nPseudo Genes (frameshifted) :: 43 of 105\nPseudo Genes (incomplete) :: 69 of 105\nPseudo Genes (internal stop) :: 18 of 105\nPseudo Genes (multiple problems) :: 23 of 105\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylobacterium phyllosphaerae
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005524 - ATP binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
cysteine peptidase family C39 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012329831.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
NHLP bacteriocin system secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_012316979.1
COORDINATES: similar to AA sequence:RefSeq:WP_007568457.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_012340147.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338195.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338196.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338197.1
COORDINATES: similar to AA sequence:RefSeq:WP_012338198.1
COORDINATES: protein motif:HMM:NF020036.2
COORDINATES: similar to AA sequence:RefSeq:WP_020095769.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012320237.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012340157.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603156.1
COORDINATES: similar to AA sequence:RefSeq:WP_012335796.1
COORDINATES: protein motif:HMM:NF016362.2
COORDINATES: similar to AA sequence:RefSeq:WP_012316974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007566950.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007566948.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012340155.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012318275.1
COORDINATES: similar to AA sequence:RefSeq:WP_012318639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340150.1
COORDINATES: similar to AA sequence:RefSeq:WP_012340149.1
COORDINATES: similar to AA sequence:RefSeq:WP_005771436.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321112.1
COORDINATES: similar to AA sequence:RefSeq:WP_020096168.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_020095858.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329739.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: similar to AA sequence:RefSeq:WP_007558961.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012329840.1
COORDINATES: similar to AA sequence:RefSeq:WP_012329833.1
GO:0015440 - ABC-type peptide transporter activity [Evidence IEA]
GO:0043213 - bacteriocin transport [Evidence IEA]
NHLP bacteriocin export ABC transporter permease/ATPase subunit
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein