Paenisporosarcina antarctica strain CGMCC 1.6503 plasmid unnamed, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Paenisporosarcina.
Complete genome sequence of Paenisporosarcina antarctica CGMCC 1.6503T
Submitted (19-MAR-2019) Life Science and Technology Department, Dalian University, Xuefu Street, Dalian, Liaoning 116622, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP038016.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 28-FEB-2019\nAssembly Method :: HGAP v. Feb-2019\nAssembly Name :: E2636_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 152.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/20/2023 01:23:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,811\nCDSs (total) :: 3,714\nGenes (coding) :: 3,665\nCDSs (with protein) :: 3,665\nGenes (RNA) :: 97\nrRNAs :: 9, 10, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 10, 9 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 4\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 29 of 49\nPseudo Genes (incomplete) :: 32 of 49\nPseudo Genes (internal stop) :: 19 of 49\nPseudo Genes (multiple problems) :: 24 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Paenisporosarcina antarctica
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
primase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018393277.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019412918.1
COORDINATES: similar to AA sequence:RefSeq:WP_016121600.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004431176.1
COORDINATES: protein motif:HMM:NF017328.2
GO:0009847 - spore germination [Evidence IEA]
Ger(x)C family spore germination C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF015783.2
COORDINATES: similar to AA sequence:RefSeq:WP_008296629.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004436124.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017378659.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002195035.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_004434428.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_016202379.1
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008591948.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002305070.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015008901.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: protein motif:HMM:NF012376.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF040152.1
COORDINATES: similar to AA sequence:RefSeq:WP_012369211.1
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016427101.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF020452.2
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013486823.1
COORDINATES: similar to AA sequence:RefSeq:WP_010345206.1
COORDINATES: similar to AA sequence:RefSeq:WP_010345204.1
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF012789.2
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016427078.1
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: protein motif:HMM:TIGR02122.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF012742.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003213849.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: protein motif:HMM:NF023227.2
COORDINATES: similar to AA sequence:RefSeq:WP_017378591.1
aspartyl-phosphate phosphatase Spo0E family protein
COORDINATES: protein motif:HMM:NF022986.2
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018391872.1
COORDINATES: protein motif:HMM:NF014548.2
COORDINATES: protein motif:HMM:NF039453.1
COORDINATES: similar to AA sequence:RefSeq:WP_016128186.1
COORDINATES: similar to AA sequence:RefSeq:WP_000041618.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008405351.1
COORDINATES: similar to AA sequence:RefSeq:WP_016114957.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010291194.1