Brasilonema sennae CENA114 plasmid pBOCT2.
Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Brasilonema.
Comparative genomics of Brasilonema spp. strains
Submitted (21-JUN-2018) School of Agricultural and Veterinarian Sciences, Sao Paulo State University (UNESP), Via de Acesso Prof. Paulo Donato Castellane s/n, Jaboticabal, Sao Paulo 14884-900, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP030120.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.11.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/01/2022 12:14:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,958\nCDSs (total) :: 6,901\nGenes (coding) :: 6,608\nCDSs (with protein) :: 6,608\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 293\nCDSs (without protein) :: 293\nPseudo Genes (ambiguous residues) :: 0 of 293\nPseudo Genes (frameshifted) :: 80 of 293\nPseudo Genes (incomplete) :: 230 of 293\nPseudo Genes (internal stop) :: 66 of 293\nPseudo Genes (multiple problems) :: 72 of 293\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##
COORDINATES: similar to AA sequence:RefSeq:WP_017314057.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016877657.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869139.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741171.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307491.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016877653.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740897.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313912.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741176.1
COORDINATES: similar to AA sequence:RefSeq:WP_015214270.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_016869146.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307485.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869148.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876054.1
COORDINATES: similar to AA sequence:RefSeq:WP_008277162.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308259.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017308257.1
COORDINATES: similar to AA sequence:RefSeq:WP_015195723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413367.1
COORDINATES: similar to AA sequence:RefSeq:WP_007907679.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016877618.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877636.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173920.1
COORDINATES: similar to AA sequence:RefSeq:WP_015173921.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011316309.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411134.1
COORDINATES: similar to AA sequence:RefSeq:WP_017716996.1
GO:0005515 - protein binding [Evidence IEA]
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012409846.1
COORDINATES: protein motif:HMM:NF028007.2
COORDINATES: similar to AA sequence:RefSeq:WP_012409845.1
COORDINATES: protein motif:HMM:NF025078.2
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019505925.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611286.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012166155.1
COORDINATES: similar to AA sequence:RefSeq:WP_011020875.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010996432.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407839.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407840.1
COORDINATES: similar to AA sequence:RefSeq:WP_011141412.1
COORDINATES: similar to AA sequence:RefSeq:WP_006105028.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407845.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494719.1
COORDINATES: similar to AA sequence:RefSeq:WP_010869038.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012407848.1
GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012407854.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407855.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015185714.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407857.1
COORDINATES: similar to AA sequence:RefSeq:WP_016862798.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876552.1
incomplete; too short partial abutting assembly gap; missing C-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_016867188.1
COORDINATES: similar to AA sequence:RefSeq:WP_019494710.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407859.1
phage tail sheath subtilisin-like domain-containing protein
COORDINATES: protein motif:HMM:NF018543.2
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011144089.1
COORDINATES: similar to AA sequence:RefSeq:WP_012407862.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324430.1
COORDINATES: similar to AA sequence:RefSeq:WP_019500601.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201624.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025079.2
COORDINATES: similar to AA sequence:RefSeq:WP_012412872.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412873.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413077.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF020427.2
COORDINATES: similar to AA sequence:RefSeq:WP_015183803.1
COORDINATES: protein motif:HMM:NF017829.2
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611697.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497656.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741766.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746609.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017307769.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019496075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313953.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015117845.1
COORDINATES: similar to AA sequence:RefSeq:WP_017654893.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313955.1
COORDINATES: protein motif:HMM:NF024940.2
COORDINATES: similar to AA sequence:RefSeq:WP_017740791.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993982.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111325.1
COORDINATES: similar to AA sequence:RefSeq:WP_016515348.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316717.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993979.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993978.1
COORDINATES: similar to AA sequence:RefSeq:WP_017313996.1
COORDINATES: similar to AA sequence:RefSeq:WP_017303244.1
COORDINATES: similar to AA sequence:RefSeq:WP_006632006.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126532.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740776.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017293554.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411913.1
COORDINATES: similar to AA sequence:RefSeq:WP_012411912.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993974.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316726.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740769.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741112.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307615.1
COORDINATES: protein motif:HMM:NF014273.2
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017314003.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307535.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163025.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010993906.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316838.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993882.1
COORDINATES: similar to AA sequence:RefSeq:WP_016867584.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_015117933.1
COORDINATES: similar to AA sequence:RefSeq:WP_015117934.1
COORDINATES: similar to AA sequence:RefSeq:WP_015121009.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196036.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749986.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749274.1
COORDINATES: similar to AA sequence:RefSeq:WP_019490860.1
COORDINATES: similar to AA sequence:RefSeq:WP_013719427.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307501.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201764.1
COORDINATES: similar to AA sequence:RefSeq:WP_016867385.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016950007.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197190.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316856.1
COORDINATES: similar to AA sequence:RefSeq:WP_015200806.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012409736.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015081546.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019505909.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase