Brasilonema sennae CENA114 plasmid pBOCT1, complete sequence.
Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Brasilonema.
Comparative genomics of Brasilonema spp. strains
Submitted (21-JUN-2018) School of Agricultural and Veterinarian Sciences, Sao Paulo State University (UNESP), Via de Acesso Prof. Paulo Donato Castellane s/n, Jaboticabal, Sao Paulo 14884-900, Brazil
REFSEQ INFORMATION: The reference sequence is identical to\nCP030119.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.11.1\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/01/2022 12:14:58\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 6,958\nCDSs (total) :: 6,901\nGenes (coding) :: 6,608\nCDSs (with protein) :: 6,608\nGenes (RNA) :: 57\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 44\nncRNAs :: 4\nPseudo Genes (total) :: 293\nCDSs (without protein) :: 293\nPseudo Genes (ambiguous residues) :: 0 of 293\nPseudo Genes (frameshifted) :: 80 of 293\nPseudo Genes (incomplete) :: 230 of 293\nPseudo Genes (internal stop) :: 66 of 293\nPseudo Genes (multiple problems) :: 72 of 293\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017307617.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307618.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017313996.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016877465.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877466.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016877467.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314007.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877469.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877470.1
COORDINATES: similar to AA sequence:RefSeq:WP_008273831.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018396235.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
MerR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364290.1
COORDINATES: similar to AA sequence:RefSeq:WP_016872750.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010993992.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740803.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307638.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019497070.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198172.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994001.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316699.1
COORDINATES: similar to AA sequence:RefSeq:WP_015198175.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994004.1
phage terminase large subunit family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010994005.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316695.1
COORDINATES: protein motif:HMM:NF014682.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_010994007.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013768497.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197201.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: similar to AA sequence:RefSeq:WP_011316680.1
COORDINATES: similar to AA sequence:RefSeq:WP_017309755.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186454.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186455.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186456.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497100.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364312.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017741017.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_017741050.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877479.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741057.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017307554.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015211813.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307563.1
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017741053.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454913.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
RNA polymerase sigma factor, RpoD/SigA family
COORDINATES: similar to AA sequence:RefSeq:WP_019497124.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741048.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741047.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993932.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307556.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993928.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364308.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877474.1
COORDINATES: similar to AA sequence:RefSeq:WP_016878017.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741066.1
GO:0016021 - integral component of membrane [Evidence IEA]; GO:0046930 - pore complex [Evidence IEA]
GO:0015093 - ferrous iron transmembrane transporter activity [Evidence IEA]
GO:0033212 - iron import into cell [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019497166.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
2,3-diaminopropionate biosynthesis protein SbnA
COORDINATES: similar to AA sequence:RefSeq:WP_015208262.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741009.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655328.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877478.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655367.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314048.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497158.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307611.1
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: similar to AA sequence:RefSeq:WP_017655325.1
heavy metal-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_017655324.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655323.1
COORDINATES: similar to AA sequence:RefSeq:WP_007043256.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015211735.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017747541.1
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_016870576.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292239.1
COORDINATES: similar to AA sequence:RefSeq:WP_015212126.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877572.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877602.1
COORDINATES: similar to AA sequence:RefSeq:WP_015112776.1
COORDINATES: similar to AA sequence:RefSeq:WP_006098635.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_015162926.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307575.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364272.1
COORDINATES: similar to AA sequence:RefSeq:WP_015163223.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656170.1
COORDINATES: similar to AA sequence:RefSeq:WP_017656165.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412429.1
COORDINATES: similar to AA sequence:RefSeq:WP_016871571.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655738.1
COORDINATES: similar to AA sequence:RefSeq:WP_007354884.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497146.1
COORDINATES: similar to AA sequence:RefSeq:WP_009458899.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741004.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162955.1
COORDINATES: similar to AA sequence:RefSeq:WP_016866868.1
COORDINATES: similar to AA sequence:RefSeq:WP_006530522.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015162940.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: similar to AA sequence:RefSeq:WP_012409481.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162943.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162944.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877609.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0004362 - glutathione-disulfide reductase (NADPH) activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0006749 - glutathione metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015171932.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012408603.1
COORDINATES: similar to AA sequence:RefSeq:WP_019497098.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292212.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012408600.1
COORDINATES: similar to AA sequence:RefSeq:WP_017746870.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
acyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015155656.1
COORDINATES: similar to AA sequence:RefSeq:WP_006198437.1
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012412906.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308082.1
COORDINATES: protein motif:HMM:NF025217.2
GO:0008168 - methyltransferase activity [Evidence IEA]
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016862264.1
COORDINATES: similar to AA sequence:RefSeq:WP_003097588.1
COORDINATES: protein motif:HMM:NF012337.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002624473.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011554307.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009459859.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307766.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217692.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006195159.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877636.1
COORDINATES: similar to AA sequence:RefSeq:WP_008188249.1
COORDINATES: similar to AA sequence:RefSeq:WP_012829189.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015164451.1
COORDINATES: similar to AA sequence:RefSeq:WP_015136523.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413367.1
COORDINATES: similar to AA sequence:RefSeq:WP_010993844.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314075.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314072.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186463.1
COORDINATES: similar to AA sequence:RefSeq:WP_011429076.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879183.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879184.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314066.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314065.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740897.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877653.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740899.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314060.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869139.1
COORDINATES: similar to AA sequence:RefSeq:WP_017740903.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877658.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314056.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017740909.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210495.1
COORDINATES: similar to AA sequence:RefSeq:WP_017651241.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006516401.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314050.1
COORDINATES: similar to AA sequence:RefSeq:WP_009342605.1
COORDINATES: protein motif:HMM:NF024861.2
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: similar to AA sequence:RefSeq:WP_017740544.1
COORDINATES: similar to AA sequence:RefSeq:WP_017749986.1
COORDINATES: similar to AA sequence:RefSeq:WP_016869117.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316840.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877671.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877672.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877673.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877674.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877675.1
COORDINATES: similar to AA sequence:RefSeq:WP_015081546.1
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017307519.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314102.1
COORDINATES: protein motif:HMM:NF024954.2
COORDINATES: similar to AA sequence:RefSeq:WP_017314160.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879186.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016953793.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877439.1
ribonuclease H-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010993901.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877445.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877446.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877447.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877448.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877449.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017740754.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316781.1
COORDINATES: similar to AA sequence:RefSeq:WP_017308663.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016877458.1