Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence.
type: Entry
definition: Planococcus donghaensis strain DSM 22276 plasmid pPD76, complete sequence.
sequence version: NZ_CP016544.1
sequence date: 2023-02-13
sequence: sequence
division: CON
label: NZ_CP016544.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN05417750
keyword: RefSeq
source: Planococcus donghaensis
organism: Planococcus donghaensis
taxonomy: Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
reference: 1
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP016544.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nGenome Coverage :: 145.5\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/13/2023 00:35:35\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,255\nCDSs (total) :: 3,138\nGenes (coding) :: 3,120\nCDSs (with protein) :: 3,120\nGenes (RNA) :: 117\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 5\nPseudo Genes (total) :: 18\nCDSs (without protein) :: 18\nPseudo Genes (ambiguous residues) :: 0 of 18\nPseudo Genes (frameshifted) :: 11 of 18\nPseudo Genes (incomplete) :: 5 of 18\nPseudo Genes (internal stop) :: 5 of 18\nPseudo Genes (multiple problems) :: 2 of 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 13960
topology: circular
so has quality: SO_0000988
location: 1..13960
location: region:1-13960:1
RO_0002162: 414778

NZ_CP016544
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN05417750
type: BioSample
SIO_000068: biosample

1
title: Direct Submission
author: See-Too, W.S.
journal: Submitted (11-JUL-2016) Institute of Biological Sciences, University of Malaya, University of Malaya, Kuala Lumpur 50603, Malaysia

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13960:1
position: 13960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-13960:1:source
so part of: sequence
organism: Planococcus donghaensis
mol type: genomic DNA
strain: DSM 22276
isolation source: sea
culture collection: DSM:22276
type material: type strain of Planococcus donghaensis
plasmid: pPD76
country: South Korea: East Sea

414778
type: Taxonomy
SIO_000068: taxonomy

BCM40_RS16540
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16540
pseudo: true
so part of: sequence
location: complement(<64..696)
location: region:64-696:-1
so has part: feature:64-696:-1:exon
subclass of: SO_0000010

position:64:-1
position: 64
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:696:-1
position: 696
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:64-696:-1:exon

BCM40_RS16540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
locus tag: BCM40_RS16540
inference: COORDINATES: protein motif:HMM:NF019561.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: CdaR family protein
SIO_010081: BCM40_RS16540
subclass of: SO_0000673
so part of: BCM40_RS16540
location: complement(<64..696)
location: region:64-696:-1
so has part: feature:64-696:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:64-696:-1:exon

BCM40_RS16115
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
gene: cdaA
locus tag: BCM40_RS16115
old locus tag: BCM40_16140
pseudo: true
so part of: sequence
location: complement(863..1698)
location: region:863-1698:-1
so has part: feature:863-1698:-1:exon
subclass of: SO_0000010

position:863:-1
position: 863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1698:-1
position: 1698
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:863-1698:-1:exon

BCM40_RS16115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
gene: cdaA
locus tag: BCM40_RS16115
old locus tag: BCM40_16140
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004225397.1
GO function: GO:0004016 - adenylate cyclase activity [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: diadenylate cyclase CdaA
SIO_010081: BCM40_RS16115
subclass of: SO_0000673
so part of: BCM40_RS16115
location: complement(863..1698)
location: region:863-1698:-1
so has part: feature:863-1698:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:863-1698:-1:exon

BCM40_RS16120
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16120
old locus tag: BCM40_16145
so part of: sequence
location: complement(1829..2437)
location: region:1829-2437:-1
so has part: feature:1829-2437:-1:exon
subclass of: SO_0000010

position:1829:-1
position: 1829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2437:-1
position: 2437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1829-2437:-1:exon

BCM40_RS16120
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
locus tag: BCM40_RS16120
old locus tag: BCM40_16145
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006828044.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zf-HC2 domain-containing protein
translation: MNTCPENVLELMNHYLDGDLNPSEEQQLKEHLESCPDCREQYQALSKTVAFVQSASHIQAPSDFVQKTMERLPKERQRAGVQRWLRRHPMLAAAALFCLLMSTALFTNFNDDQQFSFTKQPNLVVEGQTVIVPEGETVVGNLTIRNGDLRVEGELQGDVTIVNGQYMASSGVITGEIEEIDQAFEWLWFTIKEGFKDAAAIF
SIO_010081: BCM40_RS16120
subclass of: SO_0000673
so part of: BCM40_RS16120
location: complement(1829..2437)
location: region:1829-2437:-1
so has part: feature:1829-2437:-1:exon

WP_065527778.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1829-2437:-1:exon

BCM40_RS16125
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
gene: sigW
locus tag: BCM40_RS16125
old locus tag: BCM40_16150
so part of: sequence
location: complement(2450..3013)
location: region:2450-3013:-1
so has part: feature:2450-3013:-1:exon
subclass of: SO_0000010

position:2450:-1
position: 2450
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3013:-1
position: 3013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2450-3013:-1:exon

BCM40_RS16125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
gene: sigW
locus tag: BCM40_RS16125
old locus tag: BCM40_16150
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004225410.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: RNA polymerase sigma factor SigW
translation: MDALVNKRIAKVIKGDQNAFAEIVELYQHQLYQVCFRMLGNKQEAEDIAQEAFMRAYVNIHTFDQNRKFSTWLYRIATNLCIDRIRKKKPDYHLDAEVRGTEGLNMYSKIANEDELPEEELMRMEVQERVQYEISRLPDKYRAAIVLKYIEELPLAEISEILDLPLGTVKTRIHRGREALRKQLSNL
SIO_010081: BCM40_RS16125
subclass of: SO_0000673
so part of: BCM40_RS16125
location: complement(2450..3013)
location: region:2450-3013:-1
so has part: feature:2450-3013:-1:exon

WP_065527550.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2450-3013:-1:exon

BCM40_RS16130
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
gene: rocF
locus tag: BCM40_RS16130
old locus tag: BCM40_16155
so part of: sequence
location: complement(3270..4178)
location: region:3270-4178:-1
so has part: feature:3270-4178:-1:exon
subclass of: SO_0000010

position:3270:-1
position: 3270
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4178:-1
position: 4178
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3270-4178:-1:exon

BCM40_RS16130
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
gene: rocF
locus tag: BCM40_RS16130
old locus tag: BCM40_16155
EC number: 3.5.3.1
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008499190.1
GO function: GO:0004053 - arginase activity [Evidence IEA]
GO process: GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: arginase
translation: MNKLNISIIGVPMDHGQTRRGVDMGPSAIRYAGVVDRIEELGHRVTDEGDILIGQTDGSVDTETNLRNLKAITKATEALGDKVFNVAEAGNFPLVLGGDHSIAIGTLAGISERHENLGVIWYDAHADMNTSDTSPSGNIHGMPLAASFGHGHEKLTNIRGYSPKVKPENIVIIGARSVDPGERELIKEHGIRVYSMHEIDKMGMHAVIEESIKYLKEERNTDAVHLSLDLDGIDPMYTPGVGTPVPGGISYRESHLAMEMLFDANIITSAEFVEVNPILDEKNKTADVAVALIGSLFGEKLL
SIO_010081: BCM40_RS16130
subclass of: SO_0000673
so part of: BCM40_RS16130
location: complement(3270..4178)
location: region:3270-4178:-1
so has part: feature:3270-4178:-1:exon

WP_065527551.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3270-4178:-1:exon

BCM40_RS16135
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16135
old locus tag: BCM40_16160
so part of: sequence
location: complement(4249..4812)
location: region:4249-4812:-1
so has part: feature:4249-4812:-1:exon
subclass of: SO_0000010

position:4249:-1
position: 4249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4812:-1
position: 4812
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4249-4812:-1:exon

BCM40_RS16135
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
locus tag: BCM40_RS16135
old locus tag: BCM40_16160
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008499189.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GNAT family protein
translation: MIIESDGIRLRLLKRDDFEALWALYTPKIFEHMLNQVENFEDMVAWLEAGMNQSNVLIFAVENPETAEVIGTTRIYAIDDTNKSCEMGATFYALSAQRTHVNTSVKRALLSYCFEERGMIRVQFKTDAENVRSQKAIERIGAVKEGVLRNERIRSNGKPRDAVVYSIIDKEWPKVKKDLAKKANKYT
SIO_010081: BCM40_RS16135
subclass of: SO_0000673
so part of: BCM40_RS16135
location: complement(4249..4812)
location: region:4249-4812:-1
so has part: feature:4249-4812:-1:exon

WP_065527552.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4249-4812:-1:exon

BCM40_RS16140
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16140
old locus tag: BCM40_16165
so part of: sequence
location: complement(4828..5709)
location: region:4828-5709:-1
so has part: feature:4828-5709:-1:exon
subclass of: SO_0000010

position:4828:-1
position: 4828
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5709:-1
position: 5709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4828-5709:-1:exon

BCM40_RS16140
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
locus tag: BCM40_RS16140
old locus tag: BCM40_16165
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008499188.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: LysR family transcriptional regulator
translation: MEVQWLRTFVDAAETLNFRKTSERLLMSQPSVTVHIRLLEENLGLSLFKRSHNRVSLTEEGRHFKEKAQKVLEQLDGSVEELHAFAQGYRKKWTLAISPLMAETVLPYVLRSFTEQHPEVELVIRVEESEAIEDLVETEEVSAGISALPSISRTIESLVVYEDPLLFILPRDAYDDETGPAISIEETLRKSILFTHHHPVFWEELLEKLRLQMPGIRTMKVTQAHIVKRFIQEGLGTSFLPKSIVRRELVEGRLMEAHFDLFPLPAVSTYFLTKQMGALEEDFVEHIQSVYFT
SIO_010081: BCM40_RS16140
subclass of: SO_0000673
so part of: BCM40_RS16140
location: complement(4828..5709)
location: region:4828-5709:-1
so has part: feature:4828-5709:-1:exon

WP_065527553.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4828-5709:-1:exon

BCM40_RS16145
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16145
old locus tag: BCM40_16170
so part of: sequence
location: 5813..6892
location: region:5813-6892:1
so has part: feature:5813-6892:1:exon
subclass of: SO_0000010

position:5813:1
position: 5813
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6892:1
position: 6892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5813-6892:1:exon

BCM40_RS16145
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 414778
locus tag: BCM40_RS16145
old locus tag: BCM40_16170
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008431681.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: citrate synthase/methylcitrate synthase
translation: MFQKGLKGVVAVQTAIASVDGDLGELRYRGELVEAVIQEKSFEETAYFLWYGQSPNVQQLEQLQQQLLFYRKLPEHIVQITELLPKEISLMDAMRTLVSAYTHTKFQALSSQEQAIALTAALPVMTAAFYRIQNGQQPVEPRDDLGHTANYLWMINEQLPSAVQTEALETYLKLTMEHGMNASTFAARVTISTESDLVSAITSALGTMKGPLHGGAPSGVIDLLDTIKTEDRIAPIIEEKLNNGEKIMGFGHRVYRTEDPRSIILRKKCLALQGEDAWLDLAVTAEAYIVKKLNKQKPGRALYTNVEFYAAAIMRSIEMPTQLFTPTFSVARIVGWTVHTIEQQENNVIFRPQSEYIGT
SIO_010081: BCM40_RS16145
subclass of: SO_0000673
so part of: BCM40_RS16145
location: 5813..6892
location: region:5813-6892:1
so has part: feature:5813-6892:1:exon

WP_065527554.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5813-6892:1:exon

BCM40_RS16150
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16150
old locus tag: BCM40_16175
so part of: sequence
location: complement(6963..7035)
location: region:6963-7035:-1
so has part: feature:6963-7035:-1:exon
subclass of: SO_0000663

position:6963:-1
position: 6963
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7035:-1
position: 7035
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6963-7035:-1:exon

BCM40_RS16150
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16150
old locus tag: BCM40_16175
product: tRNA-Ala
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7000..7002),aa:Ala,seq:ggc)
SIO_010081: BCM40_RS16150
subclass of: SO_0000673
so part of: BCM40_RS16150
location: complement(6963..7035)
location: region:6963-7035:-1
so has part: feature:6963-7035:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6963-7035:-1:exon

BCM40_RS16155
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16155
old locus tag: BCM40_16180
so part of: sequence
location: complement(7067..7139)
location: region:7067-7139:-1
so has part: feature:7067-7139:-1:exon
subclass of: SO_0000663

position:7067:-1
position: 7067
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7139:-1
position: 7139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7067-7139:-1:exon

BCM40_RS16155
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16155
old locus tag: BCM40_16180
product: tRNA-Lys
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7104..7106),aa:Lys,seq:ttt)
SIO_010081: BCM40_RS16155
subclass of: SO_0000673
so part of: BCM40_RS16155
location: complement(7067..7139)
location: region:7067-7139:-1
so has part: feature:7067-7139:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7067-7139:-1:exon

BCM40_RS16160
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16160
old locus tag: BCM40_16185
so part of: sequence
location: complement(7151..7225)
location: region:7151-7225:-1
so has part: feature:7151-7225:-1:exon
subclass of: SO_0000663

position:7151:-1
position: 7151
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7225:-1
position: 7225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7151-7225:-1:exon

BCM40_RS16160
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16160
old locus tag: BCM40_16185
product: tRNA-Gln
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7191..7193),aa:Gln,seq:ttg)
SIO_010081: BCM40_RS16160
subclass of: SO_0000673
so part of: BCM40_RS16160
location: complement(7151..7225)
location: region:7151-7225:-1
so has part: feature:7151-7225:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7151-7225:-1:exon

BCM40_RS16165
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16165
old locus tag: BCM40_16190
so part of: sequence
location: complement(7245..7327)
location: region:7245-7327:-1
so has part: feature:7245-7327:-1:exon
subclass of: SO_0000663

position:7245:-1
position: 7245
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7327:-1
position: 7327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7245-7327:-1:exon

BCM40_RS16165
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16165
old locus tag: BCM40_16190
product: tRNA-Tyr
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7291..7293),aa:Tyr,seq:gta)
SIO_010081: BCM40_RS16165
subclass of: SO_0000673
so part of: BCM40_RS16165
location: complement(7245..7327)
location: region:7245-7327:-1
so has part: feature:7245-7327:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7245-7327:-1:exon

BCM40_RS16170
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16170
old locus tag: BCM40_16195
so part of: sequence
location: complement(7348..7423)
location: region:7348-7423:-1
so has part: feature:7348-7423:-1:exon
subclass of: SO_0000663

position:7348:-1
position: 7348
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7423:-1
position: 7423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7348-7423:-1:exon

BCM40_RS16170
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16170
old locus tag: BCM40_16195
product: tRNA-Val
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7388..7390),aa:Val,seq:tac)
SIO_010081: BCM40_RS16170
subclass of: SO_0000673
so part of: BCM40_RS16170
location: complement(7348..7423)
location: region:7348-7423:-1
so has part: feature:7348-7423:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7348-7423:-1:exon

BCM40_RS16175
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16175
old locus tag: BCM40_16200
so part of: sequence
location: complement(7428..7502)
location: region:7428-7502:-1
so has part: feature:7428-7502:-1:exon
subclass of: SO_0000663

position:7428:-1
position: 7428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7502:-1
position: 7502
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7428-7502:-1:exon

BCM40_RS16175
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16175
old locus tag: BCM40_16200
product: tRNA-Glu
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7467..7469),aa:Glu,seq:ttc)
SIO_010081: BCM40_RS16175
subclass of: SO_0000673
so part of: BCM40_RS16175
location: complement(7428..7502)
location: region:7428-7502:-1
so has part: feature:7428-7502:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7428-7502:-1:exon

BCM40_RS16180
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16180
old locus tag: BCM40_16205
so part of: sequence
location: complement(7559..7631)
location: region:7559-7631:-1
so has part: feature:7559-7631:-1:exon
subclass of: SO_0000663

position:7559:-1
position: 7559
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7631:-1
position: 7631
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7559-7631:-1:exon

BCM40_RS16180
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 414778
locus tag: BCM40_RS16180
old locus tag: BCM40_16205
product: tRNA-Thr
inference: COORDINATES: profile:tRNAscan-SE:2.0.12
note: Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
anticodon: (pos:complement(7596..7598),aa:Thr,seq:ggt)
SIO_010081: BCM40_RS16180
subclass of: SO_0000673
so part of: BCM40_RS16180
location: complement(7559..7631)
location: region:7559-7631:-1
so has part: feature:7559-7631:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7559-7631:-1:exon

BCM40_RS16185
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
gene: rrf
locus tag: BCM40_RS16185
old locus tag: BCM40_16210
so part of: sequence
location: complement(7674..7789)
location: region:7674-7789:-1
so has part: feature:7674-7789:-1:exon
subclass of: SO_0000573

position:7674:-1
position: 7674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7789:-1
position: 7789
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7674-7789:-1:exon

BCM40_RS16185
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 414778
gene: rrf
locus tag: BCM40_RS16185
old locus tag: BCM40_16210
product: 5S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00001
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: BCM40_RS16185
subclass of: SO_0000673
so part of: BCM40_RS16185
location: complement(7674..7789)
location: region:7674-7789:-1
so has part: feature:7674-7789:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7674-7789:-1:exon

BCM40_RS16190
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16190
old locus tag: BCM40_16215
so part of: sequence
location: complement(7865..10796)
location: region:7865-10796:-1
so has part: feature:7865-10796:-1:exon
subclass of: SO_0000573

position:7865:-1
position: 7865
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10796:-1
position: 10796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7865-10796:-1:exon

BCM40_RS16190
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 414778
locus tag: BCM40_RS16190
old locus tag: BCM40_16215
product: 23S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF02541
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: BCM40_RS16190
subclass of: SO_0000673
so part of: BCM40_RS16190
location: complement(7865..10796)
location: region:7865-10796:-1
so has part: feature:7865-10796:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7865-10796:-1:exon

BCM40_RS16195
type: Gene
subclass of: SO_0000704
RO_0002162: 414778
locus tag: BCM40_RS16195
old locus tag: BCM40_16220
so part of: sequence
location: complement(11001..12547)
location: region:11001-12547:-1
so has part: feature:11001-12547:-1:exon
subclass of: SO_0000573

position:11001:-1
position: 11001
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12547:-1
position: 12547
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11001-12547:-1:exon

BCM40_RS16195
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 414778
locus tag: BCM40_RS16195
old locus tag: BCM40_16220
product: 16S ribosomal RNA
inference: COORDINATES: nucleotide motif:Rfam:14.4:RF00177
inference: COORDINATES: profile:INFERNAL:1.1.1
note: Derived by automated computational analysis using gene prediction method: cmsearch.
SIO_010081: BCM40_RS16195
subclass of: SO_0000673
so part of: BCM40_RS16195
location: complement(11001..12547)
location: region:11001-12547:-1
so has part: feature:11001-12547:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:11001-12547:-1:exon