Rippkaea orientalis PCC 8801 plasmid pP880102, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Rippkaea; Rippkaea orientalis.
Complete sequence of plasmid2 of Cyanothece sp. PCC 8801
Submitted (11-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001289.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024134\nSource DNA and bacteria available from Himadri Pakrasi\n(pakrasi@biology2.wustl.edu)\nContacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/03/2023 01:18:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,547\nCDSs (total) :: 4,492\nGenes (coding) :: 4,404\nCDSs (with protein) :: 4,404\nGenes (RNA) :: 55\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 4\nPseudo Genes (total) :: 88\nCDSs (without protein) :: 88\nPseudo Genes (ambiguous residues) :: 0 of 88\nPseudo Genes (frameshifted) :: 24 of 88\nPseudo Genes (incomplete) :: 49 of 88\nPseudo Genes (internal stop) :: 30 of 88\nPseudo Genes (multiple problems) :: 12 of 88\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_015957339.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015169004.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
nuclease-related domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015194995.1
COORDINATES: similar to AA sequence:RefSeq:WP_015196725.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006529748.1
COORDINATES: similar to AA sequence:RefSeq:WP_009546276.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_045870830.1
COORDINATES: similar to AA sequence:RefSeq:WP_045870829.1
COORDINATES: similar to AA sequence:RefSeq:WP_015141906.1
15,16-dihydrobiliverdin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008184555.1
phycoerythrobilin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011612700.1
COORDINATES: similar to AA sequence:RefSeq:WP_006527454.1
COORDINATES: similar to AA sequence:RefSeq:WP_011613449.1
COORDINATES: similar to AA sequence:RefSeq:WP_015783605.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012597593.1
COORDINATES: similar to AA sequence:RefSeq:WP_007304208.1
COORDINATES: similar to AA sequence:RefSeq:WP_006529736.1
COORDINATES: similar to AA sequence:RefSeq:WP_007304210.1
GO:0017009 - protein-phycocyanobilin linkage [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012593089.1
GO:0030089 - phycobilisome [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
phycobilisome rod-core linker polypeptide
COORDINATES: similar to AA sequence:RefSeq:WP_007304212.1
COORDINATES: similar to AA sequence:RefSeq:WP_007309592.1
COORDINATES: similar to AA sequence:RefSeq:WP_008182286.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012596441.1
COORDINATES: similar to AA sequence:RefSeq:WP_012596440.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013325790.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007312981.1
COORDINATES: similar to AA sequence:RefSeq:WP_015956250.1
COORDINATES: similar to AA sequence:RefSeq:WP_007307984.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002783504.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012596815.1
COORDINATES: similar to AA sequence:RefSeq:WP_002770339.1
COORDINATES: similar to AA sequence:RefSeq:WP_015220887.1
COORDINATES: similar to AA sequence:RefSeq:WP_007311735.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_006615904.1
COORDINATES: similar to AA sequence:RefSeq:WP_015143812.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008278187.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593109.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF018933.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009547885.1
COORDINATES: similar to AA sequence:RefSeq:WP_015131835.1