Vibrio rarus strain LMG 23674 plasmid pLMG23674, complete sequence.
type: Entry
definition: Vibrio rarus strain LMG 23674 plasmid pLMG23674, complete sequence.
sequence version: NZ_AP024902.1
sequence date: 2022-09-29
sequence: sequence
division: CON
label: NZ_AP024902.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMD00393694
keyword: RefSeq
source: Vibrio rarus
organism: Vibrio rarus
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
reference: 1
references: 34905112
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nAP024902.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.8\nGenome Coverage :: 912x\nSequencing Technology :: Illumina MiSeq and Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 09/29/2022 10:20:39\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 3,491\nCDSs (total) :: 3,351\nGenes (coding) :: 3,267\nCDSs (with protein) :: 3,267\nGenes (RNA) :: 140\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 105\nncRNAs :: 4\nPseudo Genes (total) :: 84\nCDSs (without protein) :: 84\nPseudo Genes (ambiguous residues) :: 0 of 84\nPseudo Genes (frameshifted) :: 27 of 84\nPseudo Genes (incomplete) :: 71 of 84\nPseudo Genes (internal stop) :: 20 of 84\nPseudo Genes (multiple problems) :: 28 of 84\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 22852
topology: circular
so has quality: SO_0000988
location: 1..22852
location: region:1-22852:1
RO_0002162: 413403

NZ_AP024902
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMD00393694
type: BioSample
SIO_000068: biosample

1
title: Vibrio Clade 3.0: New Vibrionaceae Evolutionary Units Using Genome-Based Approach
author: Jiang, C.
author: Tanaka, M.
author: Nishikawa, S.
author: Mino, S.
author: Romalde, J.L.
author: Thompson, F.L.
author: Gomez-Gil, B.
author: Sawabe, T.
journal: Curr Microbiol 79 (1), 10 (2021)
pubmed: 34905112
comments: DOI:10.1007/s00284-021-02725-0 Publication Status: Online-Only

34905112
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Sawabe, T.
author: Mino, S.
journal: Submitted (20-JUL-2021) Contact:Tomoo Sawabe Hokkaido University, Faculty of Fisheries Sciences; 3-1-1 Minato-cho, Hakodate, Hokkaido 041-8611, Japan

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22852:1
position: 22852
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22852:1:source
so part of: sequence
organism: Vibrio rarus
mol type: genomic DNA
strain: LMG 23674
culture collection: LMG:23674
type material: type strain of Vibrio rarus
plasmid: pLMG23674

413403
type: Taxonomy
SIO_000068: taxonomy

OCU56_RS17355
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17355
so part of: sequence
location: complement(join(22376..22852,1..1368))
location: region:1-22852:-1
so has part: feature:1-1368:-1:exon
so has part: feature:22376-22852:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22852:-1
position: 22852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-1368:-1:exon

position:1368:-1
position: 1368
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:22376-22852:-1:exon

position:22376:-1
position: 22376
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

OCU56_RS17355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17355
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFDLICHIEKNRNYDANEILVIESSIPVTGTCKIPEDAHISFELVLTGSSTTQGIPLLFIGDIPVELKSISDTNHSITKWESVFINPFTNHKTNTGQPFRNNAGFSEFLVQFSNAKKVFRVTVDVLATKENEQLSREMLDYLSLRFSDVVNLCFSRTMVAASHTDALTECNISRLIKEAEKGISTVERSWPIFSRTIRTTPERMMSVQRGGVPDSPEGVTWLSQNQSNIVLCDSSEQTLKINNFSAKLIDGAVEVVNQNANIKENRVILSYLFQLQQKLKFIKRSIDVDNDKNESVSNEYLDYVSLDNIISQYREPVVKDLIRRVVNLEKRAVNLYKKLSFIMKEAGKPSFEPPIMTPFISRNAQYRRIYTAIFDWYKLGDVVFTDTEVFYGLRSLTTIYEFSCLVMILDSFTNMNYKVEAQEWRDFSVKSFGGGNASRPINRPNNYFFITSPDCEIEMYYEPKIWRKCYSNIGDPVVVLAEHQHFDEHHLSPDFLLKVKWRNKKNSDLLIFDAKYSPASSVQNYSLDKLISRYFFGIHQIGQDGSLGRLPTQAVWALYPKRGKQLVNSSFYAEEHCLSGQTPLLPSLGGINLRPSKQVMFQGQLQLLMDKLAL
SIO_010081: OCU56_RS17355
subclass of: SO_0000673
so part of: OCU56_RS17355
location: complement(join(22376..22852,1..1368))
location: region:1-22852:-1
so has part: feature:1-1368:-1:exon
so has part: feature:22376-22852:-1:exon

WP_261875636.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-1368:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:22376-22852:-1:exon

OCU56_RS17360
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17360
so part of: sequence
location: complement(1380..3947)
location: region:1380-3947:-1
so has part: feature:1380-3947:-1:exon
subclass of: SO_0000010

position:1380:-1
position: 1380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3947:-1
position: 3947
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1380-3947:-1:exon

OCU56_RS17360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17360
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNEVRLVVGVLGDSWAGNDEEDWYGLLEVAFEKFENDLGESEFFPINVKRHYCDSKKAFVTRNFKSLKEQFSYGQMLLIESEKSNNPNREQGNVVDYLRVQKLPSNQLLEVINIPIIPDDYNYKATLNNAPSTDYVMLAYMDNNSEAQLIGPFLWKFEENEFEHQVNVVFTSPSRTPITGINLSDYYSYQIPLHSLSKYIVEANIHSNTHSFLVNSKSIHNEFSKHGKRIDVMDDSKVLKEYASELLKAKPFNGLTAKSLEILKANINMASKSKKNKPRLFRALQLLQKANDWQQDRKTLFVDLLSSVEGQSQVENYIASHEEEYFRTFRKETFENIERNISDELTKLTLKEKSLRSTIRDLGLDADAKRKEQADMETEYRAKAEDKVRKELEQEKAELQQKVSEIKSELEGYQAEHSLHKTISDLEAKNTQLKSEHAGLTSLNIGLEQTKEDLENSIAAASKQLTDEYIRVHSLFKAMTTPSSKNETYNVFPDANIKNIVPISMLDTPHAARRDYIDAMESTLSKYNRNLSREQVVNLVVTLAQSQFTIFAGLPGSGKTSLVKIIGKAMQLGNRQHTIPVAKAWTSTKDILGYYNGLSGSYHPAPTGLWGLLNSVQGEQPENSLPVLLLLDEMNLSSPEHYFSSFLDLADNESDRVIYTGHPEQQHLHVPEHFKFIGTINQDETVQSLSPRMLDRAAVILFDGFNTDSKLSKEIDLLLPKHPAKDWLDLFSAKGANLPGNINSALKAISDCISINSSELGQRHIISHRKIKQIHAYIEVASSLLIDFDDFISLDYAIAQYILPMISGYGDGYGTRLKNLLDILQSYSMPISSNILKDIICNGEQNLYSYRYLV
SIO_010081: OCU56_RS17360
subclass of: SO_0000673
so part of: OCU56_RS17360
location: complement(1380..3947)
location: region:1380-3947:-1
so has part: feature:1380-3947:-1:exon

WP_261875637.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1380-3947:-1:exon

OCU56_RS17365
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17365
pseudo: true
so part of: sequence
location: <4246..4793
location: region:4246-4793:1
so has part: feature:4246-4793:1:exon
subclass of: SO_0000010

position:4246:1
position: 4246
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:4793:1
position: 4793
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4246-4793:1:exon

OCU56_RS17365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001015518.1
note: frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DNA cytosine methyltransferase
SIO_010081: OCU56_RS17365
subclass of: SO_0000673
so part of: OCU56_RS17365
location: <4246..4793
location: region:4246-4793:1
so has part: feature:4246-4793:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4246-4793:1:exon

OCU56_RS17370
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17370
so part of: sequence
location: 4986..6185
location: region:4986-6185:1
so has part: feature:4986-6185:1:exon
subclass of: SO_0000010

position:4986:1
position: 4986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6185:1
position: 6185
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4986-6185:1:exon

OCU56_RS17370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016797441.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MDHSQTTASFQNLKQGADEYIKRRNLRLLANNRKELRNFTRAEASAYLGIDAKTLDKYVVAAEIDPRRHEDSQWSIDLEEMYVVRGLLPETLRKELKFERSEKQKTQVIVIQNQKGGVGKTVSAATIASGLATEFHQEYRVGLIDMDGQATLSMYYAPEAEQEGELSVGDLMMGSFDLDEGETLQQVTSDAFLPTTIPNLRILPAAQSDRAMEGWFHERVFSHKLASPYSLLSDIIANVQDEFDIILIDTPPSLGYATFNAYFAATSVVFPLSITENDIDATCSYFSYIPQVWALLENANHEGYDFMKILLTNHRDSSTTTELMNSLYDYFAPYLYSKEFKHSEAIRQASSLLSTVFDMSKSEYPKSKATFQNAQQNSYEVTSQIQRDILNVWREQENK
SIO_010081: OCU56_RS17370
subclass of: SO_0000673
so part of: OCU56_RS17370
location: 4986..6185
location: region:4986-6185:1
so has part: feature:4986-6185:1:exon

WP_261875638.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4986-6185:1:exon

OCU56_RS17375
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17375
so part of: sequence
location: 6185..7255
location: region:6185-7255:1
so has part: feature:6185-7255:1:exon
subclass of: SO_0000010

position:7255:1
position: 7255
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6185-7255:1:exon

OCU56_RS17375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017449269.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParB family protein
translation: MAKKRGGSPLGNAPGSQNAQRSAAQATVSTLTRQLTSELEKSGQNAAEFLAEQFGLENVGQTMSWKLASGQTATFNEVTLSFEHVRDSTVVTFDINGRDQSLLTKESLEDLSSLEFQQFYPAVGRDVNGKIDVLDGSRRRAWFLLQEGRIKEFRILVTKDDISTADAKALAKQLQTAKEHNLREIGLQCLSIQRSDDKLTQVEVAKIVGLSQAAVSKAIKAACVDERLVNLYPDSNTLSHPDYTLLAKVMKACSDKSSMKKFIDKIQRNLVNIQAEYSLKEQKVAISSVIKSELKIAESKQVSDKVEVTPLAQFDSKGMFARKKVKGRNFSYEFGRLSKEVQTELDEAIKKVLERQ
SIO_010081: OCU56_RS17375
subclass of: SO_0000673
so part of: OCU56_RS17375
location: 6185..7255
location: region:6185-7255:1
so has part: feature:6185-7255:1:exon

WP_261875639.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6185-7255:1:exon

OCU56_RS17380
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17380
so part of: sequence
location: 7642..9051
location: region:7642-9051:1
so has part: feature:7642-9051:1:exon
subclass of: SO_0000010

position:7642:1
position: 7642
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9051:1
position: 9051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7642-9051:1:exon

OCU56_RS17380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17380
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKKTIVTEFHRVIRWKKHLKAYNKKRKAKKDRLRRIFKQDELSSDRLKSEQFKFEGARLLNELKVLNPHTRHATKREIKKRKVNFPIKGSFDIYEDPNSVFRTISTFRQLALNPNIDVIYTIHDRANTCMSSEALLGIVAAEVSEYRGQVKCPVKMHGHMKQSTSDKVLIGEVGIVGELNNAEIHGGVGIIKQNVFLFKSDNKLFESASLSAEDYKNETAIGCIKQLSKGLARFELRLMDGVEDELAMSLGEILDNAQEHCHRTSPSWYVRSFLNTDDSCLRYFELMVMNLGHSIAQTFEMLPDTSAAKADAMSYARRHSNLFTTEELLTVAALQGNVSSKKDEDMTRGQGTIRLIETFETISKEFVELRGSGDTKKNCTPIMNIISGKTVITFNGKYKSKIVINEDGSEDVHIPFNQEETLKLPPDSTSISSMANTYFPGVMINIRIPLNGRTKTLKGNSQGINKYV
SIO_010081: OCU56_RS17380
subclass of: SO_0000673
so part of: OCU56_RS17380
location: 7642..9051
location: region:7642-9051:1
so has part: feature:7642-9051:1:exon

WP_261875640.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7642-9051:1:exon

OCU56_RS17385
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17385
so part of: sequence
location: 9044..9367
location: region:9044-9367:1
so has part: feature:9044-9367:1:exon
subclass of: SO_0000010

position:9044:1
position: 9044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9367:1
position: 9367
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9044-9367:1:exon

OCU56_RS17385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17385
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNTQKINLTKLNSTLLSGRKNGERAHESMAIQFKDAYEIIARDDQLITSSYFLGLIGKELVKLAEQQGSIDEIISKLNLDKLNKKSRDECIRAVRRSISSPRALIG
SIO_010081: OCU56_RS17385
subclass of: SO_0000673
so part of: OCU56_RS17385
location: 9044..9367
location: region:9044-9367:1
so has part: feature:9044-9367:1:exon

WP_261875641.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9044-9367:1:exon

OCU56_RS17390
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17390
so part of: sequence
location: 9374..10021
location: region:9374-10021:1
so has part: feature:9374-10021:1:exon
subclass of: SO_0000010

position:9374:1
position: 9374
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10021:1
position: 10021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9374-10021:1:exon

OCU56_RS17390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17390
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRLFLFILTLVHSNVFASPAEKPLTPDSELSRAKSTQVEDTTSQKSKNDISSQVEDKNPSSKEKKETEGFISFSDMIAILAVILSSGSMLYTYSIDSINRKASIHDEYWMREVIYPIFMQSFIEFIKRSPNEFRASQGDMPLFVECYALDELNKIRDNTIFLYTIDKSFPEKAEKFIDDFEDALGEVSDYLGFKEALAMVSRDIITLLKSAQEKV
SIO_010081: OCU56_RS17390
subclass of: SO_0000673
so part of: OCU56_RS17390
location: 9374..10021
location: region:9374-10021:1
so has part: feature:9374-10021:1:exon

WP_261875642.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9374-10021:1:exon

OCU56_RS17395
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17395
so part of: sequence
location: 10285..11001
location: region:10285-11001:1
so has part: feature:10285-11001:1:exon
subclass of: SO_0000010

position:10285:1
position: 10285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11001:1
position: 11001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10285-11001:1:exon

OCU56_RS17395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17395
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011042466.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease family protein
translation: MMTKTALLALTIFCIATPTSFAGDLIKMSSSKICHDTNSPSYNRTKNFIPYNSMEECLDSGGHLPKNANNTSKGQSTSNSKYSRSQFGSGWADTDKDCQNSRMEALIAQSVSPVKFKSNKGCRVISGRWNSPYSGKTIYKASEIDIDHVVPLKWAWDHGADQWSKKKRIEIANNPANLLSVEASLNRQKGAKGLDEWLPPKNQCQYIARFERVRKTYGLKLSTSEKSKFAAIKQKHCR
SIO_010081: OCU56_RS17395
subclass of: SO_0000673
so part of: OCU56_RS17395
location: 10285..11001
location: region:10285-11001:1
so has part: feature:10285-11001:1:exon

WP_261875643.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10285-11001:1:exon

OCU56_RS17400
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17400
so part of: sequence
location: complement(11061..11579)
location: region:11061-11579:-1
so has part: feature:11061-11579:-1:exon
subclass of: SO_0000010

position:11061:-1
position: 11061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11579:-1
position: 11579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11061-11579:-1:exon

OCU56_RS17400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17400
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017097178.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-dependent hydrolase
translation: MKWLNHSLIAGAICAVVSPPHVAVCLAGATAPDWFEYILKVVNKHVKHRGPTHVLTHWLVAALAFTFIWDFHGIGTAFCWGGVSHILTDAMTVSGVPFSPYSDRRFHLFGGRFRTGDPVEYAIAAGVVVLCIGFSHAVGNTDFIPFMFDWSGMYESGLIDAKEWKTNRFRLL
SIO_010081: OCU56_RS17400
subclass of: SO_0000673
so part of: OCU56_RS17400
location: complement(11061..11579)
location: region:11061-11579:-1
so has part: feature:11061-11579:-1:exon

WP_261875644.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11061-11579:-1:exon

OCU56_RS17405
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17405
so part of: sequence
location: complement(11560..12327)
location: region:11560-12327:-1
so has part: feature:11560-12327:-1:exon
subclass of: SO_0000010

position:11560:-1
position: 11560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12327:-1
position: 12327
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11560-12327:-1:exon

OCU56_RS17405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17405
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017097179.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLIKHWVTLLSLTLFPFFAHTEDWGIKNPWAKEESVAPPDIKPFELPTLQGSSPHYNTNLPALRPAPKIDPDAIFNVVLNCYPEKSKFNLELSLVAGMRTTLDEYDTGDWPEISEHYVGIVGKMPLYSSSEQSRERQWEYQRRTATATLVAGFTQALVNRNYAYRLMGLYLALEARSQQRVIKGIAGIDEQVGLLEKTAAAHRDVLASEAKIVEQRLALVAMCEVQYSQQVNSYLEQLSYLPKPTKNETNEVAQP
SIO_010081: OCU56_RS17405
subclass of: SO_0000673
so part of: OCU56_RS17405
location: complement(11560..12327)
location: region:11560-12327:-1
so has part: feature:11560-12327:-1:exon

WP_261875625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11560-12327:-1:exon

OCU56_RS17410
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17410
so part of: sequence
location: complement(12317..13039)
location: region:12317-13039:-1
so has part: feature:12317-13039:-1:exon
subclass of: SO_0000010

position:12317:-1
position: 12317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13039:-1
position: 13039
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12317-13039:-1:exon

OCU56_RS17410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17410
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017061976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRFLKLRTDHKRVRKDGTKYVTPLIVDAPRRFAASDTRVETALKRKKCQFITGAHDSGKSRWLSRLYEQQHEIWGVAKAPVLLEGLMPLSSWVEIKDINTWYEKSQGDSPNELPWSRLNLQQKADLLADYLLDTQALLFIDDAHKLTGRKAQIARKCLLSSKIWVMCCSEEGRLPPSIRPILERRDPQRTNLESDVSYDVTKVVIWLLVVMFMVAGAWEIGIVLGGLQMLGTGRRSARAD
SIO_010081: OCU56_RS17410
subclass of: SO_0000673
so part of: OCU56_RS17410
location: complement(12317..13039)
location: region:12317-13039:-1
so has part: feature:12317-13039:-1:exon

WP_261875626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12317-13039:-1:exon

OCU56_RS17415
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17415
so part of: sequence
location: 14153..15169
location: region:14153-15169:1
so has part: feature:14153-15169:1:exon
subclass of: SO_0000010

position:14153:1
position: 14153
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15169:1
position: 15169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14153-15169:1:exon

OCU56_RS17415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17415
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005452151.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA mismatch repair protein
translation: MTDSINLTVTNEEDRKNRFISSILFSRATIFHPASRLTSTMKNKLIEVAQNGGTDQNNPLESVTIKSYGKNFQVDLHVDYLLQSHRDILETMLAYAQTIQLDDESYEAGSRLSWSNIYKTVKNGDISSSQSDNFDSFIDRDATVLSMSMYELATRMGMTTTRANYNQIERKIIQLSTAHLIVNELDDQQNIVGKKSLKFVQDYRFYCDRSKFKRKTKDTGNLTNHVFLVPDMRLLQAIRDHGYYYRLEQHKMTHYSKPSVRSFLKYIMTHKPSFLHQKMFEWALDSYIHSIASPVSHSFRSDLRKDLLNQAVQIEMDFQIQIREGDNGLQLIYVGDDN
SIO_010081: OCU56_RS17415
subclass of: SO_0000673
so part of: OCU56_RS17415
location: 14153..15169
location: region:14153-15169:1
so has part: feature:14153-15169:1:exon

WP_261875627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14153-15169:1:exon

OCU56_RS17420
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17420
so part of: sequence
location: 15169..16077
location: region:15169-16077:1
so has part: feature:15169-16077:1:exon
subclass of: SO_0000010

position:16077:1
position: 16077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15169-16077:1:exon

OCU56_RS17420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17420
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016768695.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helicase RepA family protein
translation: MLIQSLDNLLNQEKQPLDFTLNGLLKSHVGMLIAAPNIGKSHLAMCLAMEHSSSMVLLGMCANKKPAKTLIVSSEDSAQILQNRMEEKLVNCSVALKNELKQNLHFMTDVEPLVIPPEGSMQEQEAHKLYVQKVMDTFSQFDLVIIDTVTESIGRCDEVKHDRHIKNVFQQMAQKSGASLLLVHHVNKDEIRGNQEITMASGAGLTSVMRLTKCLFTLKSKDNQLSIKYLKCNYLPSHENKEFNVEIKNGLTINPERVELKISKSRSIKNEAILNTPKSITLGGSLSTNETPKNNRNLREVL
SIO_010081: OCU56_RS17420
subclass of: SO_0000673
so part of: OCU56_RS17420
location: 15169..16077
location: region:15169-16077:1
so has part: feature:15169-16077:1:exon

WP_261875628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15169-16077:1:exon

OCU56_RS17425
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17425
so part of: sequence
location: 16113..16721
location: region:16113-16721:1
so has part: feature:16113-16721:1:exon
subclass of: SO_0000010

position:16113:1
position: 16113
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16721:1
position: 16721
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16113-16721:1:exon

OCU56_RS17425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17425
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017061974.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MSHYAYLRVSSDSQDVANQKHGIYEYCNMIGIGDICFIEDVVTGKKKWKDRKLGALLSTLQKDDKLVFAEVSRIARSTLQVLEVLEFCMEHGINVYIAKQNMQLDGSMQSRITATILGLAAEIEREFISMRTKEALAARRKNGVTLGRPKGQSQSLKLDSKRDQIEKYLAIGLGVRPIAKLIEESPSTLYDYVKRKELSKKV
SIO_010081: OCU56_RS17425
subclass of: SO_0000673
so part of: OCU56_RS17425
location: 16113..16721
location: region:16113-16721:1
so has part: feature:16113-16721:1:exon

WP_261875629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16113-16721:1:exon

OCU56_RS17430
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17430
so part of: sequence
location: 16836..17384
location: region:16836-17384:1
so has part: feature:16836-17384:1:exon
subclass of: SO_0000010

position:16836:1
position: 16836
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17384:1
position: 17384
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16836-17384:1:exon

OCU56_RS17430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17430
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017055779.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MKIGYARVSSDEQTLDVQVEQLAKVGCEKIFKEKASGKSAEREELERLIEFAREGDIVHITKVDRIARNTIDALQIADKLSEKKAGLVFHDLGELDINSDVGRVIYTTISAFAEMERKRILQRCNEGRERAKEQGRHLGRFPDQQLHNRIRELSKQGLNKNAISKEVGCSRTTVYKVLAQDK
SIO_010081: OCU56_RS17430
subclass of: SO_0000673
so part of: OCU56_RS17430
location: 16836..17384
location: region:16836-17384:1
so has part: feature:16836-17384:1:exon

WP_261875630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16836-17384:1:exon

OCU56_RS17435
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17435
so part of: sequence
location: 17393..17908
location: region:17393-17908:1
so has part: feature:17393-17908:1:exon
subclass of: SO_0000010

position:17393:1
position: 17393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17908:1
position: 17908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17393-17908:1:exon

OCU56_RS17435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17435
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMILYHGRVGNDSLALSCENAYSSSLLGDKAIYLADTRRAALQYSDPMMLENRQKDRKGTSYLFEVEVEFSRLAFLTEEVCSDLSSEDLSRLSKIVDEDCMAYISKNPHLMAVMEMVGTQLLPLLKACGFDGLKHDSTLDPILAATMSDDETSFAVFNDNAIKSIRRLALT
SIO_010081: OCU56_RS17435
subclass of: SO_0000673
so part of: OCU56_RS17435
location: 17393..17908
location: region:17393-17908:1
so has part: feature:17393-17908:1:exon

WP_261875631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17393-17908:1:exon

OCU56_RS17440
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17440
so part of: sequence
location: 18151..19119
location: region:18151-19119:1
so has part: feature:18151-19119:1:exon
subclass of: SO_0000010

position:18151:1
position: 18151
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19119:1
position: 19119
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18151-19119:1:exon

OCU56_RS17440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17440
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005306968.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MTTALTSNQLQDKVTEICNELYSKGQKTSVRIVLSMLPEVNSTSTIHKYYKTWKDELEANQKSLLEKMGFSEEFTRVFMSEITRHATEAERRYRDIAEDAKDQSMRAIEDLERAEERLHKQTALLEQRELQIKTLQAENSQNNKAQEAVVQELRQQIELSNQEVSDLSDSNERLRTDLAKNELLLDGNKDLVATTKAHNDQLAEELKQLNIELVSNAKEITKLESKQEIQEALIIELKETKSSLSDQNKVLDSDLRSVNQDRHGLQVSLSSLQNIEQKLSGELTSKSDELSQCKATIVQQNETIKRHERSLLEKDEQLAQHK
SIO_010081: OCU56_RS17440
subclass of: SO_0000673
so part of: OCU56_RS17440
location: 18151..19119
location: region:18151-19119:1
so has part: feature:18151-19119:1:exon

WP_261875632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18151-19119:1:exon

OCU56_RS17445
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17445
so part of: sequence
location: 19182..19439
location: region:19182-19439:1
so has part: feature:19182-19439:1:exon
subclass of: SO_0000010

position:19182:1
position: 19182
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19439:1
position: 19439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19182-19439:1:exon

OCU56_RS17445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17445
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012534521.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIAFHQVTEGEFRRLAETNTMTKILAQESSEISNKFHLIGIDQVNGIGYAVRHGRVAELRVWRLDNLINQARAMGFIKVDVQLT
SIO_010081: OCU56_RS17445
subclass of: SO_0000673
so part of: OCU56_RS17445
location: 19182..19439
location: region:19182-19439:1
so has part: feature:19182-19439:1:exon

WP_261875633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19182-19439:1:exon

OCU56_RS17450
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17450
so part of: sequence
location: 20744..21634
location: region:20744-21634:1
so has part: feature:20744-21634:1:exon
subclass of: SO_0000010

position:20744:1
position: 20744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21634:1
position: 21634
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20744-21634:1:exon

OCU56_RS17450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17450
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010647355.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SEL1-like repeat protein
translation: MKKFILILVLFTSTAFADDDQKGVDADKVAYNVFLASAEQGDAIAQYKLATLYISGEGVQQDYKQAAKWFTKSAEQGDKISQYNLSLMYVKGEGVQQDYKQAVKWYTKSAAQGYSLAQYNLAFMYYKGEGVQQDYKQAAKWYTKAAEQGDSLAQYNLALMYANGKGVQQDYKQAAKWHTKSAEQGYSLAQNYLAFMYNTGEGVLQDYKLAVKWYTKAAEQGVAEAQYNLALMYYNGQGVLQDYKLMYMWLNLSRYNGYKGTKTTFDLITKRITSNDISKAQEASKVCLASNYTKCG
SIO_010081: OCU56_RS17450
subclass of: SO_0000673
so part of: OCU56_RS17450
location: 20744..21634
location: region:20744-21634:1
so has part: feature:20744-21634:1:exon

WP_261875634.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20744-21634:1:exon

OCU56_RS17455
type: Gene
subclass of: SO_0000704
RO_0002162: 413403
locus tag: OCU56_RS17455
so part of: sequence
location: complement(21741..21923)
location: region:21741-21923:-1
so has part: feature:21741-21923:-1:exon
subclass of: SO_0000010

position:21741:-1
position: 21741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21923:-1
position: 21923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21741-21923:-1:exon

OCU56_RS17455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 413403
locus tag: OCU56_RS17455
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDNSIEEFISLDKLDVILANAFEWDASEIVEQHIEQNKESPRFREARISLIFYMIGQVEH
SIO_010081: OCU56_RS17455
subclass of: SO_0000673
so part of: OCU56_RS17455
location: complement(21741..21923)
location: region:21741-21923:-1
so has part: feature:21741-21923:-1:exon

WP_261875635.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21741-21923:-1:exon